From 2a28723b8158b1e310a6a56df04323828b83b38e Mon Sep 17 00:00:00 2001 From: Thomas White Date: Thu, 23 Jan 2020 21:16:24 +0100 Subject: Fix conda paths --- files/run-cell.sh | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'files/run-cell.sh') diff --git a/files/run-cell.sh b/files/run-cell.sh index d4e48fc..3aac146 100644 --- a/files/run-cell.sh +++ b/files/run-cell.sh @@ -12,7 +12,7 @@ #module load crystallography/latest #export PATH=/install/bin:$PATH -source /gpfs/cfel/cxi/common/public/cfelsoft-rh7-public/conda-setup.sh -conda activate cfel_crystallography +module load maxwell miniconda3 +conda activate /gpfs/cfel/cxi/scratch/user/twhite/conda/envs/crystfel_dev indexamajig -i files.lst -o cell.stream -j `nproc` -g 5HT2B-Liu-2013.geom --peaks=peakfinder8 --threshold=800 --min-pix-count=1 --min-snr=3 -p 5HT2B.cell --indexing=xgandalf,mosflm -- cgit v1.2.3