Age | Commit message (Collapse) | Author | |
---|---|---|---|
2021-09-29 | Fix Doxygen version numbers | Thomas White | |
This also removes Doxygen from the CMake build system. It doesn't seem worth trying to make it work both ways. Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/48 | |||
2021-09-17 | SLURM: Add field for time limit | Thomas White | |
Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/49 | |||
2021-09-17 | Update online.rst to mention HDF5 | Thomas White | |
2021-09-17 | indexamajig: Add --data-format | Thomas White | |
2021-09-17 | Warn if in-memory CBF is attempted | Thomas White | |
2021-09-17 | Handle headers from in-memory HDF5s | Thomas White | |
2021-09-17 | Handle in-memory HDF5s | Thomas White | |
2021-09-17 | Avoid pointless passing of image/event | Thomas White | |
2021-09-17 | Meson: Quieten down the libccp4c compilation | Thomas White | |
Hopefully we can get these warnings fixed upstream, but I don't think it will happen soon. | |||
2021-09-09 | CMake: Ensure rpath is set correctly in libcrystfel.so. | Takanori Nakane | |
2021-09-07 | ring_check: Fix data type for malloc size | Thomas White | |
2021-09-07 | partialator write_split: Handle zero crystals | Thomas White | |
The variable-sized array can't have zero size, so we need to check. | |||
2021-09-07 | indexamajig: Avoid crash on NULL event | Thomas White | |
2021-09-07 | add_stream: Fix data type for malloc size | Thomas White | |
2021-09-07 | GUI SLURM backend: Bail out if environment can't be allocated | Thomas White | |
2021-09-07 | GUI remove_task: Remove from list before freeing | Thomas White | |
2021-09-07 | ambigator: Remove crystal list from detwin() | Thomas White | |
It's not used anywhere, and in fact is freed before being passed in. | |||
2021-09-07 | assplode(): Add some assertions | Thomas White | |
2021-09-07 | get_equiv: Bail out on error path | Thomas White | |
Error handling is sloppy here. | |||
2021-09-07 | check_box: Fix type used for sizeof | Thomas White | |
2021-09-07 | TakeTwo: Check for empty observed vector list | Thomas White | |
2021-09-07 | image_hdf5_read_header_to_cache: Remove double free on error path | Thomas White | |
2021-09-07 | fom_select_reflection_pairs: Keep zeroed intensities in dataset | Thomas White | |
Note the re-ordering of tasks, and the removal of 'continue'. | |||
2021-09-07 | init_fom: Clean up on error path | Thomas White | |
2021-09-07 | filter_noise_in_panel: Fix panel edge behaviour | Thomas White | |
2021-09-07 | lookup_panel: Check that panel name is not NULL | Thomas White | |
2021-09-07 | load_cell_from_file: Check fgets return value for first line | Thomas White | |
2021-09-06 | Meson: Get FDIP via a Wrap | Thomas White | |
2021-09-06 | electrons.rst: Add missing equals signs | Thomas White | |
2021-09-06 | INSTALL.md: Update minimum Meson version | Thomas White | |
0.55 is required for wraps with patch_directory. | |||
2021-09-03 | Meson: Add libccp4c as a wrapped subproject | Thomas White | |
2021-09-03 | Fix typo and failing tests from previous commit | Thomas White | |
2021-09-03 | Reject geometry file if fs and ss directions are not specified | Thomas White | |
2021-08-20 | get_hkl: Complain more loudly if CCP4 libraries are not available | Thomas White | |
2021-08-20 | write_to_xds: Add missing 'S' (!) | Thomas White | |
2021-08-20 | Mosflm: Add -n option when probing | Thomas White | |
2021-08-20 | Update AUTHORS | Thomas White | |
2021-08-19 | Search for OpenCL header with OpenCL | Nicholas Devenish | |
Previously, this was searching for OpenCL, and then trying to use the OpenCL header from only system locations. | |||
2021-08-19 | Meson: Check for SLURM headers as well as library | Thomas White | |
It seems that some systems have "-lslurm" but no <slurm/slurm.h>. Therefore, we need to check for both. Of course, ideally the outer test using pkg-config should work. | |||
2021-08-16 | This is CrystFEL 0.10.00.10.0 | Thomas White | |
2021-08-16 | GUI: Avoid crash when trying to index no image | Thomas White | |
2021-08-13 | partialator: Relax rejection criterion for profile radius | Thomas White | |
The previous cutoff of 0.2*reflection_separation seems to have been too conservative. It cuts out over 1000 crystals from the 8000 crystals in one of the regression tests. Examining the values shows that 0.5 is better value. It's also a realistic physical limit - more than this, and the reflections should be overlapping. | |||
2021-08-13 | Increase threshold for integration warning | Thomas White | |
The warning about "XXX reflections couldn't be integrated" is tiresome - it appears for practically every indexed pattern because there are always some reflections that fall in bad regions or at panel edges. This suppresses the warning unless the number of integration failures is more than a quarter of the total number of reflections. | |||
2021-08-12 | Updates for manual pages | Thomas White | |
2021-08-12 | CrystFELImageView: Fix adjustment semantics | Thomas White | |
This changes how CrystFELImageView handles its adjustments for the GtkScrollable interface, to match the GTK examples. In particular, it adds a call to g_object_ref_sink() which prevents premature destruction of the adjustments when the GUI is closed down. | |||
2021-08-11 | Add a missing include | Thomas White | |
2021-08-10 | GUI: Use integer conversion for FoM minimum measurements | Thomas White | |
2021-07-23 | GUI: Expose partialator --no-logs | Thomas White | |
2021-07-23 | GUI: Write partialator log files ("pr-logs") in working folder | Thomas White | |
2021-07-23 | partialator: Add --log-folder | Thomas White | |