Age | Commit message (Collapse) | Author | |
---|---|---|---|
2016-08-16 | Add reflist_add_command_and_version() | Thomas White | |
2016-08-16 | Read and write RefList notes to reflection list files | Thomas White | |
2016-08-16 | Add notes to RefList | Thomas White | |
2016-08-11 | Take rail direction as a vector rather than individual x,y,z values | Thomas White | |
Just to make it more consistent with fs/ss directions | |||
2016-08-11 | Use whole of 'value' field when parsing top-level geometry options | Thomas White | |
This is a long-standing bug, which we got away with up to now because top-level options with more than just a single number or location were rare or possibly never used at all. | |||
2016-08-10 | Ensure z component is set in dir_conv() | Thomas White | |
2016-08-10 | Set default clen_for_centering | Thomas White | |
If the rail vector is +z (the default), then the value doesn't matter. However, it still mustn't be NaN. | |||
2016-08-10 | Allow peak table location to be given in geometry file | Thomas White | |
2016-08-09 | Remove debugging output | Thomas White | |
2016-08-09 | Add rail direction to geometry | Thomas White | |
2016-07-29 | Use z components in prediction | Thomas White | |
2016-07-29 | Add z direction to panel directions and update get_q_for_panel() | Thomas White | |
2016-07-29 | Set image->dp in hdf5_read() | Thomas White | |
2016-07-28 | Check return values when writing to Mosflm or DirAx | Thomas White | |
2016-07-01 | Provide dataspace when reading data, mask and satmap | Thomas White | |
2016-07-01 | Remove slab-relative coordinates from geoptimiser | Thomas White | |
2016-07-01 | Store all "=" fields from stream, not just HDF5 ones | Thomas White | |
2016-07-01 | No more slab-relative coordinates in libcrystfel | Thomas White | |
2016-05-20 | Fixed problem with parsing of geometry file | Valerio Mariani | |
2016-05-19 | integrate_peak(): Trap if pk_total=0 | Thomas White | |
2016-04-21 | Use correct dataspace when reading HDF5 strings | Thomas White | |
2016-04-13 | Fix event enumeration | Thomas White | |
I broke it. Sorry about that. | |||
2016-04-13 | Formatting | Thomas White | |
2016-04-12 | Merge branch 'tom/testing' | Thomas White | |
2016-04-01 | Add adu_per_photon (distinct from adu_per_eV) | Thomas White | |
2016-04-01 | Remove "Too few paired peaks" warnings | Thomas White | |
We know that the prediction refinement is working. These "warnings" are really just synonyms for "indexing failed for this pattern". No big deal. | |||
2016-04-01 | Fix silly bugs and tidy up | Thomas White | |
2016-03-31 | Handle placeholders in --hdf5-peaks | Thomas White | |
2016-03-24 | Fussiness/formatting | Thomas White | |
2016-03-24 | Simplify event enumeration a bit | Thomas White | |
2016-03-24 | event_path_placeholder_subst(): Simplify a bit | Thomas White | |
2016-03-24 | Don't use %C conversion | Thomas White | |
2016-03-21 | This is CrystFEL 0.6.20.6.2 | Thomas White | |
2016-03-15 | write_detector_geometry_2(): Clean up | Thomas White | |
Fixes CRYS-138: hdfsee wipes geometry if new file is saved over old one | |||
2016-03-01 | mark_resolution_range_as_bad(): Skip if nothing to do | Thomas White | |
This speeds up indexamajig quite a bit | |||
2016-02-29 | More output when reading reflections failed | Thomas White | |
2016-02-29 | Don't predict 000 | Thomas White | |
2016-02-29 | asdf: Check array bounds before using | Thomas White | |
2016-02-29 | Formatting | Thomas White | |
2016-02-23 | Fixed bug with memspace size in write_location | Valerio Mariani | |
2016-02-09 | Fix a NULL dereference | Thomas White | |
2016-02-05 | felix: fix seg fault | Ken Beyerlein | |
2016-02-03 | Set initial prediction parameters even when not doing prediction refinement | Thomas White | |
Silly bug fix. Beamtime programming FTL. | |||
2016-01-30 | Revert "Allow peak check to pass just by accounting for more than 5 peaks" | Thomas White | |
This reverts commit 693aae4d2219632d15174fe4c4f9d0526d6166c4. Reverting because this allows a very large number (~100% "indexing rate") of false solutions to get through simply by slackening the peak detection parameters. Since we know that "-multi" indexing doesn't work well at the moment, let's fix this properly later. | |||
2016-01-30 | indexamajig: Restore --no-refine | Thomas White | |
Adds yet another indexing option... | |||
2016-01-29 | Perform prediction refinement straight after indexing | Thomas White | |
This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working. | |||
2016-01-29 | felix: return the number of crystals | Thomas White | |
2016-01-29 | Use a fresh copy of the peak list for each new indexing method | Thomas White | |
2016-01-27 | asdf: Don't assume that the number of peaks == image_feature_count() | Thomas White | |
Yes, really. Sorry about the crappy API. | |||
2016-01-15 | Use only the first two dimensions when using an external bad pixel mask or ↵ | Thomas White | |
saturation map |