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2012-02-22added fake mosflm support (runs dirax)Richard Kirian
2012-02-22indexamajig: Add missing includeThomas White
2012-02-22Tighter symmetry checkThomas White
2012-02-22Use symmetry when simulating on the GPUThomas White
2012-02-22Use symmetry when simulating (on the CPU only)Thomas White
2012-02-22indexamajig: Add --gpu-dev optionThomas White
2012-02-22Handle multiple GPUsThomas White
2012-02-22indexamajig: Take minimum gradient on command lineThomas White
2012-02-22Zap quatsThomas White
The "orientation" quaternion should not rotate the Ewald sphere, but the crystal. This cleans things up a little, removing "orientation" from "struct image".
2012-02-22Update docs and --helpThomas White
2012-02-22indexamajig: Add other cell reduction possibilities, and remove --no-matchThomas White
2012-02-22indexamajig: Remove the need to rewind(stdin)Thomas White
2012-02-22Take nominal photon energy from fileThomas White
2012-02-22s/hit/cpeak/Thomas White
Avoid confusion over the use of the word 'hit'.
2012-02-22indexamajig: Bodge round inability to rewind(stdin)Thomas White
2012-02-22indexamajig: Don't fclose(stdout)Thomas White
2012-02-22Tidy up memory leaksThomas White
2012-02-22indexamajig: Use new thread poolThomas White
2012-02-22'Filename' doesn't need to be constThomas White
2012-02-22indexamajig: Improve --helpThomas White
2012-02-22indexamajig: Option of getting peaks from the HDF5 fileThomas White
2012-02-22indexamajig: Newline belongs in output stream as wellThomas White
2012-02-22indexamajig: Command line note goes in output streamThomas White
2012-02-22Put I0 and found peaks in streamThomas White
2012-02-22indexamajig: Take output stream as a command line parameterThomas White
2012-02-22indexamajig: Rework countingThomas White
2012-02-22Make it the default to do the saturation correctionThomas White
2012-02-22indexamajig: Write command line to stdoutThomas White
This helps later archaeology
2012-02-22compare_hkl: Reject reflections with low SNRThomas White
2012-02-22Add the possibility to use a circular (instead of 'crystallographic') ↵Thomas White
integration domain
2012-02-22facetron: Add optionsThomas White
2012-02-22indexamajig: Add --no-closer-peak optionThomas White
2012-02-22Fix unit cell point group memory leakThomas White
2012-02-22Free indexing resources at the endThomas White
2012-02-22indexamajig: Implement --no-check-prefixThomas White
2012-02-22indexamajig: Check --prefix and second-guess the user if it seems appropriateThomas White
I know this is kind of naughty, but this is one of the #1 failure modes right now.
2012-02-22indexamajig: More fussing over --helpThomas White
2012-02-22indexamajig: Get peak threshold on command lineThomas White
2012-02-22indexamajig: Reformat --helpThomas White
2012-02-22Move -D_GNU_SOURCE to a better placeThomas White
2012-02-22indexamajig: Don't ignore first item (can't rewind() stdin...)Thomas White
2012-02-22Use detector geometry when generating templatesThomas White
Also, add progress bar.
2012-02-22indexamajig: Prepare for other indexing methods which need initial setupThomas White
2012-02-22indexamajig: Avoid re-counting images when the threads are joinedThomas White
2012-02-22indexamajig: Don't even try to load the cell if it's not neededThomas White
2012-02-22indexamajig: Unit cell is not needed with --no-matchThomas White
2012-02-22indexamajig: Fix uninitialised thingsThomas White
2012-02-22Reduce the scope of "count"Thomas White
Lists of counts had pervaded every corner of CrystFEL, being used as markers for the presence of reflections. Now we have a better way of doing this, the ReflItemList, and few parts of the suite apart from process_hkl have any business knowing how many observations were made of a particular reflection.
2012-02-22indexamajig: Add missing lockThomas White
2012-02-22indexamajig: Rework threading not to use pthread_timedjoin_np()Thomas White
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