Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-07-29 | Move MessagePack stuff to separate file | Thomas White | |
Note the nicer separation: ZMQ is in indexamajig only, whereas MessagePack becomes something generally accessible through libcrystfel. | |||
2020-07-29 | Remove references to old headers | Thomas White | |
2020-07-29 | Convert more bits to detgeom | Thomas White | |
2020-07-29 | Convert stream to DataTemplate | Thomas White | |
2020-07-29 | Convert estimate_peak_resolution to detgeom | Thomas White | |
2020-07-29 | Get rid of imagefile_field_list and stuff_from_stream | Thomas White | |
The only place this is used is in geoptimiser, to get the average_camera_length, itself a very bad solution. | |||
2020-07-29 | Port indexamajig to new API, part II | Thomas White | |
This also removes a large chunk of legacy code | |||
2020-07-29 | Port indexamajig to new API, part I | Thomas White | |
2020-07-29 | Split off parse_peaksearch() | Thomas White | |
2020-07-29 | get_peaks_msgpack(): Convert to new API | Thomas White | |
2020-07-29 | indexamajig: Create detgeom structure from old detector | Thomas White | |
Intermediate solution on the path to DataTemplate everywhere. | |||
2020-07-29 | ImageFeatureList: Store panel number, not pointer | Thomas White | |
This makes the conversion to DataTemplate/detgeom MUCH easier. | |||
2020-01-10 | Mass update of copyright dates | Thomas White | |
2019-10-17 | indexamajig: Shut down gracefully after failed image load | Thomas White | |
2019-09-12 | indexamajig: Get rid of --fix-bandwidth / use bandwidth from geometry file | Thomas White | |
2019-09-10 | indexamajig: Add --peaks=none | Thomas White | |
2019-07-24 | indexamajig: Free spectrum if it was generated for this image | Thomas White | |
2019-07-24 | indexamajig: Set Gaussian spectrum if one is not provided | Thomas White | |
2019-03-15 | Add a couple more set_last_task calls | Thomas White | |
2019-03-14 | indexamajig: Add --no-image-data | Thomas White | |
2019-03-14 | Tweak ZMQ messages | Thomas White | |
2019-03-14 | More ZMQ/MsgPack logic fixes | Thomas White | |
2019-03-14 | Fix variable initialisation and decision about data source | Thomas White | |
2019-03-14 | Connect up hooks for unpacking MsgPack data | Thomas White | |
2019-03-14 | Don't always dereference filename_p_e | Thomas White | |
2019-03-14 | ZMQ connection and setup stuff | Thomas White | |
2019-03-07 | indexamajig: Status message improvements | Thomas White | |
1. Show the number of hits 2. Keep producing updates while the last patterns are being processed 3. Don't duplicate the code for displaying the status messages | |||
2019-03-06 | indexamajig: Rename --min-gradient to --min-squared-gradient | Thomas White | |
The eventual aim of this is to deprecate the "--min-gradient" option, resolving the long-standing confusion about whether this option is the gradient or the squared gradient. | |||
2018-12-03 | indexamajig: Add --wait-for-file | Thomas White | |
2018-11-15 | indexamajig: Name and shame slow processing stages | Thomas White | |
2018-09-27 | Write in stream whether crystal was selected as a "hit" or not | Thomas White | |
2018-09-10 | indexamajig: read pink beam spectrum from file | Alexandra Tolstikova | |
2018-07-27 | indexamajig: Complain if profile radius determination fails | Thomas White | |
2018-06-10 | indexamajig: Estimate resolution based on peaks only | Thomas White | |
2018-05-30 | Whitespace fussiness | Thomas White | |
2018-05-30 | Use only one min-snr option | Thomas White | |
2018-05-30 | Changed parameter window-radius -> local-bg-radius | Yaroslav Gevorkov | |
2018-05-30 | Changed sig_fac to min_snr | Yaroslav Gevorkov | |
2018-05-24 | Generalise peakfinder9 error messages, and fail if not compiled in | Thomas White | |
2018-05-24 | Update authorship and copyright dates | Thomas White | |
2018-05-24 | Formatting | Thomas White | |
2018-05-24 | Add "peakfinder9" | Yaroslav Gevorkov | |
2018-04-20 | Set default bandwidth very small | Thomas White | |
This seems to have been reducing data quality by overpredicting. | |||
2018-02-27 | New partiality model from Ginn et al. | Thomas White | |
2018-02-27 | Formatting | Thomas White | |
2018-02-27 | indexamajig: Add --overpredict | Thomas White | |
2017-06-27 | indexamajig: Add --no-non-hits-in-stream | Thomas White | |
2017-06-21 | indexamajig: Add --min-peaks (basic hitfinder functionality) | Thomas White | |
2017-05-02 | Initial CBF stuff | Thomas White | |
2017-03-31 | Offset peak locations from HDF5 or CXI files by 0.5,0.5 | Thomas White | |
CrystFEL considers all peak locations to be distances from the corner of the detector panel, in pixel units, consistent with its description of detector geometry. In contrast, Cheetah considers the peak locations to be pixel indices in the data array. Therefore, a half-pixel offset is needed when importing the peak lists. For users who need the old behaviour, this commit adds a new option indexamajig --no-half-pixel-shift to deactivate this offset. |