From 683ba26884737f5d4b272b23ab890608dbbd6c9a Mon Sep 17 00:00:00 2001 From: Thomas White Date: Sun, 17 Sep 2017 10:54:19 +0200 Subject: indexamajig: --help documentation for new indexing options --- src/indexamajig.c | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/src/indexamajig.c b/src/indexamajig.c index 44b91338..d73cd002 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -148,6 +148,13 @@ static void show_help(const char *s) " --copy-hdf5-field Copy the value of field into the stream. You\n" " can use this option as many times as you need.\n" "\n" +"\nOverall control of the indexing process:\n\n" +" --no-check-cell Don't check lattice parameters against input cell.\n" +" --no-cell-combinations Don't use axis combinations when checking cell.\n" +" --no-multi Don't repeat indexing to index multiple hits.\n" +" --no-retry Don't repeat indexing to increase indexing rate.\n" +" --no-refine Skip the prediction refinement step.\n" +"\n" "\nOptions for greater performance:\n\n" " -j Run analyses in parallel. Default 1.\n" " --temp-dir= Put the temporary folder under .\n" @@ -163,7 +170,6 @@ static void show_help(const char *s) " --no-non-hits-in-stream Do not include non-hit frames in the stream.\n" " (see --min-peaks)\n" " --int-diag= Show debugging information about reflections.\n" -" --no-refine Skip the prediction refinement step.\n" " --profile Show timing data for performance monitoring.\n" " --no-half-pixel-shift Don't offset the HDF5 peak locations by 0.5 px.\n" "\nLow-level options for the felix indexer:\n\n" -- cgit v1.2.3