From da7edab59513c5e3f7148fc81562382a7a715e2c Mon Sep 17 00:00:00 2001 From: Thomas White Date: Mon, 18 Jun 2018 14:59:49 +0200 Subject: indexamajig: Tidy up --help --- src/indexamajig.c | 61 ++++++++++++++++++++++++------------------------------- 1 file changed, 26 insertions(+), 35 deletions(-) diff --git a/src/indexamajig.c b/src/indexamajig.c index 424ac474..f4d99f83 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -110,13 +110,16 @@ static void show_help(const char *s) " (peakfinder8 only) Default: 0\n" " --max-res= Maximum resolution for peak search (in pixels)\n" " (peakfinder8 only) Default: 1200\n" -" --min-snr-biggest-pix= (peakFinder9 only) min snr of the biggest pixel in " -" the peak\n" -" --min-snr-peak-pix= (peakFinder9 only) min snr of a peak pixel\n" -" --min-sig= (peakFinder9 only) minimum standard deviation of " -" the background\n" -" --min-peak-over-neighbour= (peakFinder9 only) just for speed. Biggest pixel" -" in peak must be n higher than this.\n" +" --min-snr-biggest-pix=\n" +" Minimum snr of the biggest pixel in the peak\n" +" (peakfinder9 only)\n" +" --min-snr-peak-pix=\n" +" Minimum snr of a peak pixel (peakfinder9 only)\n" +" --min-sig= Minimum standard deviation of the background\n" +" (peakfinder9 only)\n" +" --min-peak-over-neighbour=\n" +" Just for speed. Biggest pixel in peak must be n\n" +" higher than this (peakfinder9 only).\n" " --no-use-saturated Reject saturated peaks\n" " --no-revalidate Don't re-integrate and check HDF5 peaks\n" " --no-half-pixel-shift\n" @@ -172,35 +175,23 @@ static void show_help(const char *s) " --felix-tthrange-min Minimum 2theta to consider for indexing (degrees)\n" " Default: 0\n" "\n" -" --xgandalf-sampling-pitch-selector \n" -" Sampling pitch selector \n" -" [0-4](extremelyLoose to extremelyDense)\n" -" [5-7](standardWithSeondaryMillerIndices\n" -" to extremelyDenseWithSeondaryMillerIndices)\n" -" Default is 6\n" -" --xgandalf-grad-desc-iterations-selector \n" -" Gradient descent iterations selector \n" -" [0-5] (veryFew to extremelyMany)\n" -" Default is 4 (manyMany)" +" --xgandalf-sampling-pitch\n" +" Sampling pitch: 0 (loosest) to 7 (most dense)\n" +" Default: 6\n" +" --xgandalf-grad-desc-iterations\n" +" Gradient descent iterations: 0 (few) to 5 (many)\n" +" Default: 4\n" " --xgandalf-tolerance Relative tolerance of the lattice vectors.\n" -" Default is 0.02\n" -" --xgandalf-no-deviation-from-provided-cell fitted cell will have the\n" -" same lattice parameters as\n" -" the provided one\n" -" --xgandalf-min-lattice-vector-length " -" Minimum possible lattice vector length in A.\n" -" Used for fitting without prior lattice\n" -" as starting point for gradient descent,\n" -" so the final minimum lattice vector length\n" -" can be smaller.\n" -" Default: 30A\n" -" --xgandalf-max-lattice-vector-length " -" Maximum possible lattice vector length in A.\n" -" Used for fitting without prior lattice\n" -" as starting point for gradient descent,\n" -" so the final maximum lattice vector length\n" -" can be bigger.\n" -" Default: 250A\n" +" Default is 0.02\n" +" --xgandalf-no-deviation-from-provided-cell\n" +" Force the fitted cell to have the same lattice\n" +" parameters as the provided one\n" +" --xgandalf-min-lattice-vector-length\n" +" Minimum possible lattice vector length in A.\n" +" Default: 30 A\n" +" --xgandalf-max-lattice-vector-length\n" +" Maximum possible lattice vector length in A.\n" +" Default: 250 A\n" "\n" "\nIntegration options:\n\n" " --integration= Integration method (rings,prof2d)-(cen,nocen)\n" -- cgit v1.2.3