From cfbbdae0ff6b0823fd9de0971f51b9fd939db5b6 Mon Sep 17 00:00:00 2001 From: Thomas White Date: Thu, 26 Apr 2012 14:08:12 +0200 Subject: indexamajig: Make --no-closer-peak the default --- doc/man/indexamajig.1 | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) (limited to 'doc/man/indexamajig.1') diff --git a/doc/man/indexamajig.1 b/doc/man/indexamajig.1 index ac443906..6d28fdc4 100644 --- a/doc/man/indexamajig.1 +++ b/doc/man/indexamajig.1 @@ -295,10 +295,19 @@ Run \fIn\fR analyses in parallel. Default: 1. .PD Don't attempt to correct the prefix (see \fB--prefix\fR) if it doesn't look correct. +.PD 0 +.IP \fB--closer-peak\fR +.PD +If you use this option, indexamajig will integrate around the location of a detected peak instead of the predicted peak location if one is found close to the predicted position, within ten pixels. \fBDon't use this option\fR, because +there is currently no way to set the definition of 'nearby' to be appropriate +for your data. + .PD 0 .IP \fB--no-closer-peak\fR .PD -Normally, indexamajig will integrate around the location of a detected peak instead of the predicted peak location if one is found close to the predicted position. This option disables this behaviour. Normally it doesn't make much difference either way. +This is the opposite of \fB--closer-peak\fR, and is provided for compatibility +with old scripts because this option selects the behaviour which is now the +default. .PD 0 .IP \fB--insane\fR -- cgit v1.2.3