From 7836e89222bf587639adc1ad06dfd6d216d25379 Mon Sep 17 00:00:00 2001 From: Thomas White Date: Thu, 29 Aug 2019 14:03:43 +0200 Subject: indexamajig: Remove --no-cell-combinations Also remove all the related API stuff. We now have a much better way of checking indexing results. --- doc/man/indexamajig.1 | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) (limited to 'doc') diff --git a/doc/man/indexamajig.1 b/doc/man/indexamajig.1 index 1866231a..16dc7247 100644 --- a/doc/man/indexamajig.1 +++ b/doc/man/indexamajig.1 @@ -120,7 +120,7 @@ You do not need to explicitly specify anything more than the indexing method its If you don't know what to give for this option, leave it out completely. Indexamajig will then automatically select indexing methods based on the programs available on your computer. -The indexing results from the indexing engine will be put through a number of refinement and checking stages. See the options \fB--no-check-cell, --no-cell-combinations, --no-multi, --no-retry\fR and \fB--no-refine\fR below for more details. +The indexing results from the indexing engine will be put through a number of refinement and checking stages. See the options \fB--no-check-cell, --no-multi, --no-retry\fR and \fB--no-refine\fR below for more details. .SH PEAK INTEGRATION If the pattern could be successfully indexed, peaks will be predicted in the pattern and their intensities measured. You have a choice of integration methods, and you specify the method using \fB--integration\fR. Choose from: @@ -367,11 +367,6 @@ The default is \fB--tolerance=5,5,5,1.5\fR. .PD Do not check the cell parameters against the reference unit cell (given with \fB-p\fR). If you've used older versions of CrystFEL, this replaces putting "-raw" in the indexing method. -.PD 0 -.IP \fB--no-cell-combinations -.PD -When checking the cell parameters against the reference cell (see \fB-p\fR), do not make combinations of the axes of the candidate cell (such as \fBa'\fR=2\fBa\fR+\fBb\fR) to make it fit. Usually this reduces the success rate, but is necessary if one of the cell parameters is close to a multiple of the others. \fRThis happens for tetragonal lysozyme\fB. - .PD 0 .IP \fB--multi .PD -- cgit v1.2.3