From cf481c5e99e6923358687d66fd6afecc95625a57 Mon Sep 17 00:00:00 2001 From: Thomas White Date: Sat, 26 Mar 2011 20:26:06 +0100 Subject: Add documentation via gtk-doc --- doc/reference/CrystFEL-docs.sgml | 39 ++ doc/reference/CrystFEL-sections.txt | 41 ++ doc/reference/Makefile.am | 102 +++++ doc/reference/Makefile.in | 838 ++++++++++++++++++++++++++++++++++++ 4 files changed, 1020 insertions(+) create mode 100644 doc/reference/CrystFEL-docs.sgml create mode 100644 doc/reference/CrystFEL-sections.txt create mode 100644 doc/reference/Makefile.am create mode 100644 doc/reference/Makefile.in (limited to 'doc') diff --git a/doc/reference/CrystFEL-docs.sgml b/doc/reference/CrystFEL-docs.sgml new file mode 100644 index 00000000..08f97f3d --- /dev/null +++ b/doc/reference/CrystFEL-docs.sgml @@ -0,0 +1,39 @@ + + +]> + + + CrystFEL Reference Manual + + For CrystFEL 0.2.0. + + This is the internal documentation for CrystFEL. Unless you are looking at + the code, writing new programs or fixing bugs, you should not need to read + this. + + + + Images + + + + + Handling reflection data + + + + + + Miscellaneous + + + + + + API Index + + + diff --git a/doc/reference/CrystFEL-sections.txt b/doc/reference/CrystFEL-sections.txt new file mode 100644 index 00000000..1adda7b5 --- /dev/null +++ b/doc/reference/CrystFEL-sections.txt @@ -0,0 +1,41 @@ +
+reflist +RefList +Reflection + +reflist_new +reflist_free + +find_refl +next_found_refl +optimise_reflist + +get_excitation_error +get_detector_pos +get_indices +get_partiality +get_intensity +get_partial +
+ +
+reflitemlist +ReflItemList + +new_items +
+ +
+utils +show_matrix_eqn +
+ +
+quaternion +quaternion +
+ +
+image +image +
diff --git a/doc/reference/Makefile.am b/doc/reference/Makefile.am new file mode 100644 index 00000000..fcc9f152 --- /dev/null +++ b/doc/reference/Makefile.am @@ -0,0 +1,102 @@ +## Process this file with automake to produce Makefile.in + +# We require automake 1.6 at least. +AUTOMAKE_OPTIONS = 1.6 + +# This is a blank Makefile.am for using gtk-doc. +# Copy this to your project's API docs directory and modify the variables to +# suit your project. See the GTK+ Makefiles in gtk+/docs/reference for examples +# of using the various options. + +# The name of the module, e.g. 'glib'. +DOC_MODULE=CrystFEL + +# Uncomment for versioned docs and specify the version of the module, e.g. '2'. +#DOC_MODULE_VERSION=2 + + +# The top-level SGML file. You can change this if you want to. +DOC_MAIN_SGML_FILE=$(DOC_MODULE)-docs.sgml + +# Directories containing the source code, relative to $(srcdir). +# gtk-doc will search all .c and .h files beneath these paths +# for inline comments documenting functions and macros. +# e.g. DOC_SOURCE_DIR=../../../gtk ../../../gdk +DOC_SOURCE_DIR=../../src + +# Extra options to pass to gtkdoc-scangobj. Not normally needed. +SCANGOBJ_OPTIONS= + +# Extra options to supply to gtkdoc-scan. +# e.g. SCAN_OPTIONS=--deprecated-guards="GTK_DISABLE_DEPRECATED" +SCAN_OPTIONS= + +# Extra options to supply to gtkdoc-mkdb. +# e.g. MKDB_OPTIONS=--sgml-mode --output-format=xml +MKDB_OPTIONS=--sgml-mode --output-format=xml + +# Extra options to supply to gtkdoc-mktmpl +# e.g. MKTMPL_OPTIONS=--only-section-tmpl +MKTMPL_OPTIONS= + +# Extra options to supply to gtkdoc-mkhtml +MKHTML_OPTIONS= + +# Extra options to supply to gtkdoc-fixref. Not normally needed. +# e.g. FIXXREF_OPTIONS=--extra-dir=../gdk-pixbuf/html --extra-dir=../gdk/html +FIXXREF_OPTIONS= + +# Used for dependencies. The docs will be rebuilt if any of these change. +# e.g. HFILE_GLOB=$(top_srcdir)/gtk/*.h +# e.g. CFILE_GLOB=$(top_srcdir)/gtk/*.c +HFILE_GLOB=$(top_srcdir)/src/*.h +CFILE_GLOB=$(top_srcdir)/src/*.c + +# Extra header to include when scanning, which are not under DOC_SOURCE_DIR +# e.g. EXTRA_HFILES=$(top_srcdir}/contrib/extra.h +EXTRA_HFILES= + +# Header files to ignore when scanning. 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for i in $(DOC_SOURCE_DIR) ; do \ + _source_dir="$${_source_dir} --source-dir=$$i" ; \ + done ; \ + cd $(srcdir) && \ + gtkdoc-scan --module=$(DOC_MODULE) --ignore-headers="$(IGNORE_HFILES)" $${_source_dir} $(SCAN_OPTIONS) $(EXTRA_HFILES) + @if grep -l '^..*$$' $(srcdir)/$(DOC_MODULE).types > /dev/null 2>&1 ; then \ + CC="$(GTKDOC_CC)" LD="$(GTKDOC_LD)" RUN="$(GTKDOC_RUN)" CFLAGS="$(GTKDOC_CFLAGS) $(CFLAGS)" LDFLAGS="$(GTKDOC_LIBS) $(LDFLAGS)" gtkdoc-scangobj $(SCANGOBJ_OPTIONS) --module=$(DOC_MODULE) --output-dir=$(srcdir) ; \ + else \ + cd $(srcdir) ; \ + for i in $(SCANOBJ_FILES) ; do \ + test -f $$i || touch $$i ; \ + done \ + fi + @touch scan-build.stamp + +$(DOC_MODULE)-decl.txt $(SCANOBJ_FILES) $(DOC_MODULE)-sections.txt $(DOC_MODULE)-overrides.txt: scan-build.stamp + @true + +#### xml #### + +sgml-build.stamp: $(DOC_MODULE)-decl.txt $(SCANOBJ_FILES) $(DOC_MODULE)-sections.txt $(DOC_MODULE)-overrides.txt $(expand_content_files) + @echo 'gtk-doc: Building XML' + @-chmod -R u+w $(srcdir) + @_source_dir='' ; for i in $(DOC_SOURCE_DIR) ; do \ + _source_dir="$${_source_dir} --source-dir=$$i" ; \ + done ; \ + cd $(srcdir) && \ + gtkdoc-mkdb --module=$(DOC_MODULE) --output-format=xml --expand-content-files="$(expand_content_files)" --main-sgml-file=$(DOC_MAIN_SGML_FILE) $${_source_dir} $(MKDB_OPTIONS) + @touch sgml-build.stamp + +sgml.stamp: sgml-build.stamp + @true + +#### html #### + +html-build.stamp: sgml.stamp $(DOC_MAIN_SGML_FILE) $(content_files) + @echo 'gtk-doc: Building HTML' + @-chmod -R u+w $(srcdir) + @rm -rf $(srcdir)/html + @mkdir $(srcdir)/html + @mkhtml_options=""; \ + gtkdoc-mkhtml 2>&1 --help | grep >/dev/null "\-\-path"; \ + if test "$(?)" = "0"; then \ + mkhtml_options=--path="$(srcdir)"; \ + fi; \ + cd $(srcdir)/html && gtkdoc-mkhtml $$mkhtml_options $(MKHTML_OPTIONS) $(DOC_MODULE) ../$(DOC_MAIN_SGML_FILE) + @test "x$(HTML_IMAGES)" = "x" || ( cd $(srcdir) && cp $(HTML_IMAGES) html ) + @echo 'gtk-doc: Fixing cross-references' + @cd $(srcdir) && gtkdoc-fixxref --module=$(DOC_MODULE) --module-dir=html --html-dir=$(HTML_DIR) $(FIXXREF_OPTIONS) + @touch html-build.stamp + +#### pdf #### + +pdf-build.stamp: sgml.stamp $(DOC_MAIN_SGML_FILE) $(content_files) + @echo 'gtk-doc: Building PDF' + @-chmod -R u+w $(srcdir) + @rm -rf $(srcdir)/$(DOC_MODULE).pdf + @mkpdf_imgdirs=""; \ + if test "x$(HTML_IMAGES)" != "x"; then \ + for img in $(HTML_IMAGES); do \ + part=`dirname $$img`; \ + echo $$mkpdf_imgdirs | grep >/dev/null "\-\-imgdir=$$part "; \ + if test $$? != 0; then \ + mkpdf_imgdirs="$$mkpdf_imgdirs --imgdir=$$part"; \ + fi; \ + done; \ + fi; \ + cd $(srcdir) && gtkdoc-mkpdf --path="$(abs_srcdir)" $$mkpdf_imgdirs $(DOC_MODULE) $(DOC_MAIN_SGML_FILE) $(MKPDF_OPTIONS) + @touch pdf-build.stamp + +############## + +clean-local: + rm -f *~ *.bak + rm -rf .libs + +distclean-local: + cd $(srcdir) && \ + rm -rf xml $(REPORT_FILES) $(DOC_MODULE).pdf \ + $(DOC_MODULE)-decl-list.txt $(DOC_MODULE)-decl.txt + +maintainer-clean-local: clean + cd $(srcdir) && rm -rf html + +install-data-local: + @installfiles=`echo $(srcdir)/html/*`; \ + if test "$$installfiles" = '$(srcdir)/html/*'; \ + then echo '-- Nothing to install' ; \ + else \ + if test -n "$(DOC_MODULE_VERSION)"; then \ + installdir="$(DESTDIR)$(TARGET_DIR)-$(DOC_MODULE_VERSION)"; \ + else \ + installdir="$(DESTDIR)$(TARGET_DIR)"; \ + fi; \ + $(mkinstalldirs) $${installdir} ; \ + for i in $$installfiles; do \ + echo '-- Installing '$$i ; \ + $(INSTALL_DATA) $$i $${installdir}; \ + done; \ + if test -n "$(DOC_MODULE_VERSION)"; then \ + mv -f $${installdir}/$(DOC_MODULE).devhelp2 \ + $${installdir}/$(DOC_MODULE)-$(DOC_MODULE_VERSION).devhelp2; \ + mv -f $${installdir}/$(DOC_MODULE).devhelp \ + $${installdir}/$(DOC_MODULE)-$(DOC_MODULE_VERSION).devhelp; \ + fi; \ + $(GTKDOC_REBASE) --relative --dest-dir=$(DESTDIR) --html-dir=$${installdir}; \ + fi + +uninstall-local: + @if test -n "$(DOC_MODULE_VERSION)"; then \ + installdir="$(DESTDIR)$(TARGET_DIR)-$(DOC_MODULE_VERSION)"; \ + else \ + installdir="$(DESTDIR)$(TARGET_DIR)"; \ + fi; \ + rm -rf $${installdir} + +# +# Require gtk-doc when making dist +# +@ENABLE_GTK_DOC_TRUE@dist-check-gtkdoc: +@ENABLE_GTK_DOC_FALSE@dist-check-gtkdoc: +@ENABLE_GTK_DOC_FALSE@ @echo "*** gtk-doc must be installed and enabled in order to make dist" +@ENABLE_GTK_DOC_FALSE@ @false + +dist-hook: dist-check-gtkdoc dist-hook-local + mkdir $(distdir)/html + cp $(srcdir)/html/* $(distdir)/html + -cp $(srcdir)/$(DOC_MODULE).pdf $(distdir)/ + -cp $(srcdir)/$(DOC_MODULE).types $(distdir)/ + -cp $(srcdir)/$(DOC_MODULE)-sections.txt $(distdir)/ + cd $(distdir) && rm -f $(DISTCLEANFILES) + $(GTKDOC_REBASE) --online --relative --html-dir=$(distdir)/html + +.PHONY : dist-hook-local docs + +-include $(top_srcdir)/git.mk + +# Tell versions [3.59,3.63) of GNU make to not export all variables. +# Otherwise a system limit (for SysV at least) may be exceeded. +.NOEXPORT: -- cgit v1.2.3