From 21acbb9efcbc5158f62e43d025db1ca7b2369fb8 Mon Sep 17 00:00:00 2001
From: Thomas White <taw@physics.org>
Date: Fri, 26 Jun 2020 17:10:29 +0200
Subject: Add crystal_copy_deep()

---
 libcrystfel/src/crystal.c | 41 ++++++++++++++++++++++++++++++++++++++++-
 libcrystfel/src/crystal.h |  1 +
 2 files changed, 41 insertions(+), 1 deletion(-)

(limited to 'libcrystfel')

diff --git a/libcrystfel/src/crystal.c b/libcrystfel/src/crystal.c
index 9202c668..bec3a890 100644
--- a/libcrystfel/src/crystal.c
+++ b/libcrystfel/src/crystal.c
@@ -7,7 +7,7 @@
  *                       a research centre of the Helmholtz Association.
  *
  * Authors:
- *   2013-2016 Thomas White <taw@physics.org>
+ *   2013-2020 Thomas White <taw@physics.org>
  *   2016      Valerio Mariani
  *
  * This file is part of CrystFEL.
@@ -33,6 +33,7 @@
 
 #include "crystal.h"
 #include "utils.h"
+#include "reflist-utils.h"
 
 
 /**
@@ -126,6 +127,44 @@ Crystal *crystal_copy(const Crystal *cryst)
 }
 
 
+/**
+ * \param cryst: A \ref Crystal to copy.
+ *
+ * Creates a new \ref Crystal which is a copy of \p cryst.  The copy is a "deep
+ * copy", which means that copies ARE made of the data structures which
+ * \p cryst contains references to, for example its \ref RefList.
+ *
+ * \returns A (deep) copy of \p cryst, or NULL on failure.
+ *
+ */
+Crystal *crystal_copy_deep(const Crystal *cryst)
+{
+	Crystal *c;
+
+	c = crystal_new();
+	if ( c == NULL ) return NULL;
+
+	memcpy(c, cryst, sizeof(Crystal));
+	if ( c->notes != NULL ) c->notes = strdup(c->notes);
+
+	if ( cryst->cell != NULL ) {
+		UnitCell *cell;
+		cell = cell_new_from_cell(cryst->cell);
+		if ( cell == NULL ) return NULL;
+		c->cell = cell;
+	}
+
+	if ( cryst->reflections != NULL ) {
+		RefList *refls;
+		refls = copy_reflist(cryst->reflections);
+		if ( refls == NULL ) return NULL;
+		c->reflections = refls;
+	}
+
+	return c;
+}
+
+
 /**
  * \param cryst: A \ref Crystal to free.
  *
diff --git a/libcrystfel/src/crystal.h b/libcrystfel/src/crystal.h
index 669c173f..592a4b43 100644
--- a/libcrystfel/src/crystal.h
+++ b/libcrystfel/src/crystal.h
@@ -56,6 +56,7 @@ extern "C" {
 
 extern Crystal *crystal_new(void);
 extern Crystal *crystal_copy(const Crystal *cryst);
+extern Crystal *crystal_copy_deep(const Crystal *cryst);
 extern void crystal_free(Crystal *cryst);
 
 extern UnitCell *crystal_get_cell(Crystal *cryst);
-- 
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