From e3fa832cd31d5dab91426b88d405b810e41cf98f Mon Sep 17 00:00:00 2001
From: Thomas White <taw@physics.org>
Date: Thu, 28 Jun 2018 14:37:46 +0200
Subject: Tidy up files created by Mosflm and Felix during probe

---
 libcrystfel/src/felix.c  | 32 +++++++++++++++++++++++++++++---
 libcrystfel/src/mosflm.c | 31 +++++++++++++++++++++++++++++--
 2 files changed, 58 insertions(+), 5 deletions(-)

(limited to 'libcrystfel')

diff --git a/libcrystfel/src/felix.c b/libcrystfel/src/felix.c
index f87892c7..b0cb605d 100644
--- a/libcrystfel/src/felix.c
+++ b/libcrystfel/src/felix.c
@@ -3,12 +3,12 @@
  *
  * Invoke Felix for multi-crystal autoindexing.
  *
- * Copyright © 2015-2017 Deutsches Elektronen-Synchrotron DESY,
+ * Copyright © 2015-2018 Deutsches Elektronen-Synchrotron DESY,
  *                       a research centre of the Helmholtz Association.
  *
  * Authors:
- *   2015 Thomas White <taw@physics.org>
- *   2015 Kenneth Beyerlein <kenneth.beyerlein@desy.de>
+ *   2015-2018 Thomas White <taw@physics.org>
+ *   2015      Kenneth Beyerlein <kenneth.beyerlein@desy.de>
  *
  * This file is part of CrystFEL.
  *
@@ -38,6 +38,7 @@
 #include <string.h>
 #include <sys/types.h>
 #include <sys/wait.h>
+#include <sys/stat.h>
 #include <unistd.h>
 #include <assert.h>
 #include <fcntl.h>
@@ -713,6 +714,20 @@ void felix_cleanup(IndexingPrivate *pp)
 }
 
 
+static int file_exists(const char *filename)
+{
+	struct stat s;
+
+	if ( stat(filename, &s) != 0 ) {
+		if ( errno == ENOENT ) return 0;
+		ERROR("Failed to check for %s.\n", filename);
+		exit(1);
+	}
+
+	return 1;
+}
+
+
 const char *felix_probe(UnitCell *cell)
 {
 	pid_t pid;
@@ -726,6 +741,15 @@ const char *felix_probe(UnitCell *cell)
 		return NULL;
 	}
 
+	/* Felix will write gmon.out when we test it, which we are
+	 * are going to delete afterwards.  Better check the file doesn't exist
+	 * first, in case it was important. */
+	if ( file_exists("gmon.out") ) {
+		ERROR("Please move or delete gmon.out from the working "
+		      "directory first.\n");
+		exit(1);
+	}
+
 	pid = forkpty(&pty, NULL, NULL, NULL);
 	if ( pid == -1 ) {
 		return NULL;
@@ -758,6 +782,8 @@ const char *felix_probe(UnitCell *cell)
 	close(pty);
 	waitpid(pid, &status, 0);
 
+	unlink("gmon.out");
+
 	if ( ok ) return "felix";
 	return NULL;
 }
diff --git a/libcrystfel/src/mosflm.c b/libcrystfel/src/mosflm.c
index 36eeb35d..9dc99162 100644
--- a/libcrystfel/src/mosflm.c
+++ b/libcrystfel/src/mosflm.c
@@ -3,13 +3,13 @@
  *
  * Invoke the DPS auto-indexing algorithm through MOSFLM
  *
- * Copyright © 2012-2016 Deutsches Elektronen-Synchrotron DESY,
+ * Copyright © 2012-2018 Deutsches Elektronen-Synchrotron DESY,
  *                       a research centre of the Helmholtz Association.
  * Copyright © 2012 Richard Kirian
  *
  * Authors:
  *   2010      Richard Kirian <rkirian@asu.edu>
- *   2010-2016 Thomas White <taw@physics.org>
+ *   2010-2018 Thomas White <taw@physics.org>
  *   2014      Takanori Nakane <nakane.t@gmail.com>
  *
  * This file is part of CrystFEL.
@@ -65,6 +65,7 @@
 #include <string.h>
 #include <sys/types.h>
 #include <sys/wait.h>
+#include <sys/stat.h>
 #include <unistd.h>
 #include <assert.h>
 #include <fcntl.h>
@@ -874,6 +875,20 @@ static void chop_word(char *s)
 }
 
 
+static int file_exists(const char *filename)
+{
+	struct stat s;
+
+	if ( stat(filename, &s) != 0 ) {
+		if ( errno == ENOENT ) return 0;
+		ERROR("Failed to check for %s.\n", filename);
+		exit(1);
+	}
+
+	return 1;
+}
+
+
 const char *mosflm_probe(UnitCell *cell)
 {
 	pid_t pid;
@@ -884,6 +899,15 @@ const char *mosflm_probe(UnitCell *cell)
 	int ok = 0;
 	int l;
 
+	/* Mosflm will write mosflm.lp and SUMMARY when we test it, which we are
+	 * are going to delete afterwards.  Better check they don't exist first,
+	 * in case they were important. */
+	if ( file_exists("mosflm.lp") || file_exists("SUMMARY") ) {
+		ERROR("Please move or delete mosflm.lp and SUMMARY from the "
+		      "working directory first.\n");
+		exit(1);
+	}
+
 	pid = forkpty(&pty, NULL, NULL, NULL);
 	if ( pid == -1 ) {
 		return NULL;
@@ -923,6 +947,9 @@ const char *mosflm_probe(UnitCell *cell)
 	close(pty);
 	waitpid(pid, &status, 0);
 
+	unlink("mosflm.lp");
+	unlink("SUMMARY");
+
 	if ( !ok ) return NULL;
 
 	if ( cell_has_parameters(cell) ) return "mosflm-cell-nolatt,mosflm-latt-nocell";
-- 
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