From 11fe97d53a627fd5caf067bd9fe8f967cf3a72df Mon Sep 17 00:00:00 2001
From: Thomas White <taw@physics.org>
Date: Sat, 9 Feb 2013 18:13:15 -0800
Subject: Fussiness, formatting and SPOT

---
 src/im-sandbox.c  | 15 +++++----------
 src/im-sandbox.h  | 12 ++++++------
 src/indexamajig.c | 40 ++++++++++++++++++++--------------------
 3 files changed, 31 insertions(+), 36 deletions(-)

(limited to 'src')

diff --git a/src/im-sandbox.c b/src/im-sandbox.c
index cefdeeb9..69b22cfc 100644
--- a/src/im-sandbox.c
+++ b/src/im-sandbox.c
@@ -182,9 +182,6 @@ static void process_image(const struct index_args *iargs,
 {
 	float *data_for_measurement;
 	size_t data_size;
-	int config_cmfilter = iargs->config_cmfilter;
-	int config_noisefilter = iargs->config_noisefilter;
-	IndexingMethod *indm = iargs->indm;
 	int check;
 	struct hdfile *hdfile;
 	struct image image;
@@ -258,16 +255,14 @@ static void process_image(const struct index_args *iargs,
 		return;
 	}
 
-	if ( config_cmfilter ) {
-		filter_cm(&image);
-	}
+	if ( iargs->cmfilter ) filter_cm(&image);
 
 	/* Take snapshot of image after CM subtraction but before
 	 * the aggressive noise filter. */
 	data_size = image.width * image.height * sizeof(float);
 	data_for_measurement = malloc(data_size);
 
-	if ( config_noisefilter ) {
+	if ( iargs->noisefilter ) {
 		filter_noise(&image, data_for_measurement);
 	} else {
 		memcpy(data_for_measurement, image.data, data_size);
@@ -303,7 +298,7 @@ static void process_image(const struct index_args *iargs,
 	image.data = data_for_measurement;
 
 	/* Index the pattern */
-	index_pattern(&image, indm, iargs->ipriv);
+	index_pattern(&image, iargs->indm, iargs->ipriv);
 
 	pargs->n_crystals = image.n_crystals;
 
@@ -334,8 +329,8 @@ static void process_image(const struct index_args *iargs,
 
 	/* Integrate all the crystals at once - need all the crystals so that
 	 * overlaps can be detected. */
-	integrate_reflections(&image, iargs->config_closer,
-	                              iargs->config_bgsub,
+	integrate_reflections(&image, iargs->closer,
+	                              iargs->bgsub,
 	                              iargs->min_int_snr,
 	                              iargs->ir_inn,
 	                              iargs->ir_mid,
diff --git a/src/im-sandbox.h b/src/im-sandbox.h
index f7951c04..a454d867 100644
--- a/src/im-sandbox.h
+++ b/src/im-sandbox.h
@@ -43,12 +43,12 @@ enum {
 struct index_args
 {
 	UnitCell *cell;
-	int config_cmfilter;
-	int config_noisefilter;
-	int config_verbose;
-	int config_satcorr;
-	int config_closer;
-	int config_bgsub;
+	int cmfilter;
+	int noisefilter;
+	int verbose;
+	int satcorr;
+	int closer;
+	int bgsub;
 	float threshold;
 	float min_gradient;
 	float min_snr;
diff --git a/src/indexamajig.c b/src/indexamajig.c
index 4d0b227a..ee173c6a 100644
--- a/src/indexamajig.c
+++ b/src/indexamajig.c
@@ -179,12 +179,12 @@ int main(int argc, char *argv[])
 
 	/* Defaults */
 	iargs.cell = NULL;
-	iargs.config_cmfilter = 0;
-	iargs.config_noisefilter = 0;
-	iargs.config_verbose = 0;
-	iargs.config_satcorr = 1;
-	iargs.config_closer = 0;
-	iargs.config_bgsub = 1;
+	iargs.cmfilter = 0;
+	iargs.noisefilter = 0;
+	iargs.verbose = 0;
+	iargs.satcorr = 1;
+	iargs.closer = 0;
+	iargs.bgsub = 1;
 	iargs.tols[0] = 5.0;
 	iargs.tols[1] = 5.0;
 	iargs.tols[2] = 5.0;
@@ -233,20 +233,20 @@ int main(int argc, char *argv[])
 		{"image",              1, NULL,               'e'},
 
 		/* Long-only options with no arguments */
-		{"filter-cm",          0, &iargs.config_cmfilter,    1},
-		{"filter-noise",       0, &iargs.config_noisefilter, 1},
-		{"verbose",            0, &iargs.config_verbose,     1},
-		{"no-sat-corr",        0, &iargs.config_satcorr,     0},
-		{"sat-corr",           0, &iargs.config_satcorr, 1},
-		{"no-check-prefix",    0, &config_checkprefix, 0},
-		{"no-closer-peak",     0, &iargs.config_closer,      0},
-		{"closer-peak",        0, &iargs.config_closer,      1},
-		{"basename",           0, &config_basename,    1},
-		{"bg-sub",             0, &iargs.config_bgsub,       1},
-		{"no-bg-sub",          0, &iargs.config_bgsub,       0},
-		{"no-peaks-in-stream", 0, &iargs.stream_peaks, 0},
-		{"no-refls-in-stream", 0, &iargs.stream_refls, 0},
-		{"res-cutoff",         0, &iargs.res_cutoff,   1},
+		{"filter-cm",          0, &iargs.cmfilter,           1},
+		{"filter-noise",       0, &iargs.noisefilter,        1},
+		{"verbose",            0, &iargs.verbose,            1},
+		{"no-sat-corr",        0, &iargs.satcorr,            0},
+		{"sat-corr",           0, &iargs.satcorr,            1},
+		{"no-check-prefix",    0, &config_checkprefix,       0},
+		{"no-closer-peak",     0, &iargs.closer,             0},
+		{"closer-peak",        0, &iargs.closer,             1},
+		{"basename",           0, &config_basename,          1},
+		{"bg-sub",             0, &iargs.bgsub,              1},
+		{"no-bg-sub",          0, &iargs.bgsub,              0},
+		{"no-peaks-in-stream", 0, &iargs.stream_peaks,       0},
+		{"no-refls-in-stream", 0, &iargs.stream_refls,       0},
+		{"res-cutoff",         0, &iargs.res_cutoff,         1},
 		{"integrate-saturated",0, &iargs.integrate_saturated,1},
 		{"use-saturated",      0, &iargs.use_saturated,      1},
 		{"no-revalidate",      0, &iargs.no_revalidate,      1},
-- 
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