From 30a43a9ccadfb72432264fdb6a5bca8540b06e86 Mon Sep 17 00:00:00 2001
From: Valerio Mariani <valerio.mariani@desy.de>
Date: Tue, 3 Feb 2015 13:57:50 +0100
Subject: Remove --element option from inxexamajig

---
 src/im-sandbox.c    |  1 -
 src/indexamajig.c   | 11 +----------
 src/process_image.h |  1 -
 3 files changed, 1 insertion(+), 12 deletions(-)

(limited to 'src')

diff --git a/src/im-sandbox.c b/src/im-sandbox.c
index 61cfa459..ba709f6f 100644
--- a/src/im-sandbox.c
+++ b/src/im-sandbox.c
@@ -516,7 +516,6 @@ static void run_work(const struct index_args *iargs,
 	free(iargs->indm);
 	free(iargs->ipriv);
 	free_detector_geometry(iargs->det);
-	free(iargs->element);
 	free(iargs->hdf5_peak_path);
 	free_copy_hdf5_field_list(iargs->copyme);
 	cell_free(iargs->cell);
diff --git a/src/indexamajig.c b/src/indexamajig.c
index e3daa1c9..44f067e2 100644
--- a/src/indexamajig.c
+++ b/src/indexamajig.c
@@ -125,9 +125,6 @@ static void show_help(const char *s)
 "    --check-hdf5-snr    Check SNR for peaks from --peaks=hdf5.\n"
 "    --peak-radius=<r>   Integration radii for peak search.\n"
 "    --int-radius=<r>    Set the integration radii.  Default: 4,5,7.\n"
-"-e, --image=<element>   Use this image from the HDF5 file.\n"
-"                          Example: /data/data0.\n"
-"                          Default: The first one found.\n"
 "    --push-res=<n>      Integrate higher than apparent resolution cutoff.\n"
 "    --highres=<n>       Absolute resolution cutoff in Angstroms.\n"
 "\n"
@@ -217,7 +214,6 @@ int main(int argc, char *argv[])
 	iargs.det = NULL;
 	iargs.peaks = PEAK_ZAEF;
 	iargs.beam = &beam;
-	iargs.element = NULL;
 	iargs.hdf5_peak_path = strdup("/processing/hitfinder/peakinfo");
 	iargs.cxi_hdf5_peaks = 0;
 	iargs.copyme = NULL;
@@ -256,7 +252,6 @@ int main(int argc, char *argv[])
 		{"pdb",                1, NULL,               'p'},
 		{"prefix",             1, NULL,               'x'},
 		{"threshold",          1, NULL,               't'},
-		{"image",              1, NULL,               'e'},
 		{"beam",               1, NULL,               'b'},
 
 		/* Long-only options with no arguments */
@@ -303,7 +298,7 @@ int main(int argc, char *argv[])
 	};
 
 	/* Short options */
-	while ((c = getopt_long(argc, argv, "hi:o:z:p:x:j:g:t:e:vb:",
+	while ((c = getopt_long(argc, argv, "hi:o:z:p:x:j:g:t:vb:",
 	                        longopts, NULL)) != -1)
 	{
 		switch (c) {
@@ -355,10 +350,6 @@ int main(int argc, char *argv[])
 			iargs.threshold = strtof(optarg, NULL);
 			break;
 
-			case 'e' :
-			iargs.element = strdup(optarg);
-			break;
-
 			case 2 :
 			speaks = strdup(optarg);
 			break;
diff --git a/src/process_image.h b/src/process_image.h
index 8dba8a85..a0bd6a83 100644
--- a/src/process_image.h
+++ b/src/process_image.h
@@ -62,7 +62,6 @@ struct index_args
 	int peaks;                /* Peak detection method */
 	float tols[4];
 	struct beam_params *beam;
-	char *element;
 	char *hdf5_peak_path;
 	int cxi_hdf5_peaks;
 	float pk_inn;
-- 
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