/* * stream.h * * Stream tools * * Copyright © 2013-2020 Deutsches Elektronen-Synchrotron DESY, * a research centre of the Helmholtz Association. * * Authors: * 2010-2020 Thomas White * 2014 Valerio Mariani * 2011 Andrew Aquila * * This file is part of CrystFEL. * * CrystFEL is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * CrystFEL is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with CrystFEL. If not, see . * */ #ifndef STREAM_H #define STREAM_H /** * \file stream.h * Stream functions (for indexing results) */ struct image; #include "datatemplate.h" #include "cell.h" #define STREAM_GEOM_START_MARKER "----- Begin geometry file -----" #define STREAM_GEOM_END_MARKER "----- End geometry file -----" #define STREAM_CELL_START_MARKER "----- Begin unit cell -----" #define STREAM_CELL_END_MARKER "----- End unit cell -----" #define STREAM_CHUNK_START_MARKER "----- Begin chunk -----" #define STREAM_CHUNK_END_MARKER "----- End chunk -----" #define STREAM_PEAK_LIST_START_MARKER "Peaks from peak search" #define STREAM_PEAK_LIST_END_MARKER "End of peak list" #define STREAM_CRYSTAL_START_MARKER "--- Begin crystal" #define STREAM_CRYSTAL_END_MARKER "--- End crystal" #define STREAM_REFLECTION_START_MARKER "Reflections measured after indexing" #define STREAM_REFLECTION_END_MARKER "End of reflections" /** * An opaque structure representing a stream being read or written */ typedef struct _stream Stream; /** * A bitfield of things that can be read from or written to a stream. * Use this together with stream_{read,write}_chunk to read/write the * stream faster if you don't need all the information. * * General information about crystals (including unit cell parameters) * is always read and written. **/ typedef enum { /** Read the integrated reflections */ STREAM_REFLECTIONS = 2, /** Read the peak search results */ STREAM_PEAKS = 4, /** Read the image data */ STREAM_IMAGE_DATA = 16, } StreamFlags; #ifdef __cplusplus extern "C" { #endif /* Opening/closing streams */ extern Stream *stream_open_for_read(const char *filename); extern Stream *stream_open_for_write(const char *filename, const DataTemplate *dtempl); extern Stream *stream_open_fd_for_write(int fd, const DataTemplate *dtempl); extern void stream_close(Stream *st); /* Writing things to stream header */ extern void stream_write_geometry_file(Stream *st, const char *geom_filename); extern void stream_write_target_cell(Stream *st, const UnitCell *cell); extern void stream_write_commandline_args(Stream *st, int argc, char *argv[]); extern void stream_write_indexing_methods(Stream *st, const char *indm_str); /* Metadata */ extern int stream_has_old_indexers(Stream *st); extern char *stream_audit_info(Stream *st); extern char *stream_geometry_file(Stream *st); /* Low-level stuff used for indexamajig sandbox */ extern int stream_get_fd(Stream *st); extern int stream_rewind(Stream *st); /* Random access */ extern int stream_scan_chunks(Stream *st); extern int stream_select_chunk(Stream *st, int chunk_number); /* Read/write chunks */ extern struct image *stream_read_chunk(Stream *st, StreamFlags srf); extern int stream_write_chunk(Stream *st, const struct image *image, StreamFlags srf); #ifdef __cplusplus } #endif #endif /* STREAM_H */