/* * gui_peaksearch.c * * Peak search parts of GUI * * Copyright © 2020 Deutsches Elektronen-Synchrotron DESY, * a research centre of the Helmholtz Association. * * Authors: * 2020 Thomas White * * This file is part of CrystFEL. * * CrystFEL is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * CrystFEL is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with CrystFEL. If not, see . * */ #ifdef HAVE_CONFIG_H #include #endif #include #include #include #include #include #include #include #include #include #include "crystfel_gui.h" #include "crystfelimageview.h" void update_peaks(struct crystfelproject *proj) { struct image *image; if ( proj->n_frames == 0 ) return; if ( proj->show_peaks ) { image = crystfel_image_view_get_image_struct(CRYSTFEL_IMAGE_VIEW(proj->imageview)); if ( image == NULL ) return; switch ( proj->peak_search_params.method ) { case PEAK_ZAEF: search_peaks(image, proj->peak_search_params.threshold, proj->peak_search_params.min_sq_gradient, proj->peak_search_params.min_snr, proj->peak_search_params.pk_inn, proj->peak_search_params.pk_mid, proj->peak_search_params.pk_out, 1); break; case PEAK_PEAKFINDER8: STATUS("NB peakfinder8 doesn't yet use new API\n"); search_peaks_peakfinder8(image, 2048, proj->peak_search_params.threshold, proj->peak_search_params.min_snr, proj->peak_search_params.min_pix_count, proj->peak_search_params.max_pix_count, proj->peak_search_params.local_bg_radius, proj->peak_search_params.min_res, proj->peak_search_params.max_res, 1); break; default: ERROR("This peak detection method not implemented!\n"); break; } crystfel_image_view_set_peaks(CRYSTFEL_IMAGE_VIEW(proj->imageview), image->features, 0); } else { crystfel_image_view_set_peaks(CRYSTFEL_IMAGE_VIEW(proj->imageview), NULL, 0); } } static int get_val(GtkWidget *entry, float *v) { const char *text; float val; text = gtk_entry_get_text(GTK_ENTRY(entry)); if (sscanf(text, "%f", &val) != 1) { ERROR("Invalid value\n"); return 1; } *v = val; return 0; } static void peaksearch_threshold_sig(GtkWidget *entry, struct crystfelproject *proj) { float val; if ( get_val(entry, &val) ) return; proj->peak_search_params.threshold = val; update_peaks(proj); } static void peaksearch_sqgradient_sig(GtkWidget *entry, struct crystfelproject *proj) { float val; if ( get_val(entry, &val) ) return; proj->peak_search_params.min_sq_gradient = val; update_peaks(proj); } static void peaksearch_snr_sig(GtkWidget *entry, struct crystfelproject *proj) { float val; if ( get_val(entry, &val) ) return; proj->peak_search_params.min_snr = val; update_peaks(proj); } static void peaksearch_min_pix_count_sig(GtkWidget *entry, struct crystfelproject *proj) { float val; if ( get_val(entry, &val) ) return; proj->peak_search_params.min_pix_count = val; update_peaks(proj); } static void peaksearch_max_pix_count_sig(GtkWidget *entry, struct crystfelproject *proj) { float val; if ( get_val(entry, &val) ) return; proj->peak_search_params.max_pix_count = val; update_peaks(proj); } static void peaksearch_local_bg_radius_sig(GtkWidget *entry, struct crystfelproject *proj) { float val; if ( get_val(entry, &val) ) return; proj->peak_search_params.local_bg_radius = val; update_peaks(proj); } static void peaksearch_min_res_sig(GtkWidget *entry, struct crystfelproject *proj) { float val; if ( get_val(entry, &val) ) return; proj->peak_search_params.min_res = val; update_peaks(proj); } static void peaksearch_max_res_sig(GtkWidget *entry, struct crystfelproject *proj) { float val; if ( get_val(entry, &val) ) return; proj->peak_search_params.max_res = val; update_peaks(proj); } static void add_param(GtkWidget *params_box, const char *labeltext, float initial_val, GCallback act_cb, struct crystfelproject *proj) { GtkWidget *hbox; GtkWidget *label; GtkWidget *entry; char tmp[64]; hbox = gtk_hbox_new(FALSE, 0.0); gtk_box_pack_start(GTK_BOX(params_box), GTK_WIDGET(hbox), FALSE, FALSE, 8.0); label = gtk_label_new(labeltext); gtk_misc_set_alignment(GTK_MISC(label), 1.0, 0.5); gtk_box_pack_start(GTK_BOX(hbox), GTK_WIDGET(label), FALSE, FALSE, 2.0); entry = gtk_entry_new(); gtk_box_pack_start(GTK_BOX(hbox), GTK_WIDGET(entry), TRUE, TRUE, 2.0); snprintf(tmp, 63, "%.2f", initial_val); gtk_entry_set_text(GTK_ENTRY(entry), tmp); g_signal_connect(G_OBJECT(entry), "activate", G_CALLBACK(act_cb), proj); } static void peaksearch_algo_changed(GtkWidget *combo, struct crystfelproject *proj) { const char *algo_id; if ( proj->peak_params != NULL ) { gtk_container_remove(GTK_CONTAINER(proj->peak_vbox), proj->peak_params); proj->peak_params = NULL; } proj->peak_params = gtk_vbox_new(FALSE, 0.0); gtk_box_pack_start(GTK_BOX(proj->peak_vbox), GTK_WIDGET(proj->peak_params), FALSE, FALSE, 8.0); algo_id = gtk_combo_box_get_active_id(GTK_COMBO_BOX(combo)); if ( strcmp(algo_id, "zaef") == 0 ) { proj->peak_search_params.method = PEAK_ZAEF; add_param(proj->peak_params, "Threshold:", proj->peak_search_params.threshold, G_CALLBACK(peaksearch_threshold_sig), proj); add_param(proj->peak_params, "Minimum squared gradient:", proj->peak_search_params.min_sq_gradient, G_CALLBACK(peaksearch_sqgradient_sig), proj); add_param(proj->peak_params, "Minimum signal/noise ratio:", proj->peak_search_params.min_snr, G_CALLBACK(peaksearch_snr_sig), proj); } else if ( strcmp(algo_id, "peakfinder8") == 0 ) { proj->peak_search_params.method = PEAK_PEAKFINDER8; add_param(proj->peak_params, "Threshold:", proj->peak_search_params.threshold, G_CALLBACK(peaksearch_threshold_sig), proj); add_param(proj->peak_params, "Minimum signal/noise ratio:", proj->peak_search_params.min_snr, G_CALLBACK(peaksearch_snr_sig), proj); add_param(proj->peak_params, "Minimum number of pixels:", proj->peak_search_params.min_pix_count, G_CALLBACK(peaksearch_min_pix_count_sig), proj); add_param(proj->peak_params, "Maximum number of pixels:", proj->peak_search_params.max_pix_count, G_CALLBACK(peaksearch_max_pix_count_sig), proj); add_param(proj->peak_params, "Local background radius:", proj->peak_search_params.local_bg_radius, G_CALLBACK(peaksearch_local_bg_radius_sig), proj); add_param(proj->peak_params, "Minimum resolution (pixels):", proj->peak_search_params.min_res, G_CALLBACK(peaksearch_min_res_sig), proj); add_param(proj->peak_params, "Maximum resolution (pixels):", proj->peak_search_params.max_res, G_CALLBACK(peaksearch_max_res_sig), proj); } /* else no parameters! */ /* FIXME: Radii */ gtk_widget_show_all(proj->peak_vbox); update_peaks(proj); } static void peaksearch_response_sig(GtkWidget *dialog, gint resp, struct crystfelproject *proj) { if ( (resp == GTK_RESPONSE_DELETE_EVENT) || (resp == GTK_RESPONSE_CANCEL) ) { proj->peak_search_params = proj->original_params; update_peaks(proj); } gtk_widget_destroy(dialog); proj->peak_vbox = NULL; proj->peak_params = NULL; } gint peaksearch_sig(GtkWidget *widget, struct crystfelproject *proj) { GtkWidget *dialog; GtkWidget *content_area; GtkWidget *vbox; GtkWidget *hbox; GtkWidget *label; GtkWidget *combo; GtkWidget *w; if ( proj->peak_params != NULL ) return FALSE; proj->show_peaks = 1; w = gtk_ui_manager_get_widget(proj->ui, "/ui/mainwindow/view/peaks"); gtk_check_menu_item_set_active(GTK_CHECK_MENU_ITEM(w), 1); /* Take a copy of the original parameters, for reverting */ proj->original_params = proj->peak_search_params; dialog = gtk_dialog_new_with_buttons("Peak search", GTK_WINDOW(proj->window), GTK_DIALOG_DESTROY_WITH_PARENT, "Discard changes", GTK_RESPONSE_CANCEL, "Confirm", GTK_RESPONSE_ACCEPT, NULL); g_signal_connect(G_OBJECT(dialog), "response", G_CALLBACK(peaksearch_response_sig), proj); vbox = gtk_vbox_new(FALSE, 0.0); content_area = gtk_dialog_get_content_area(GTK_DIALOG(dialog)); gtk_container_add(GTK_CONTAINER(content_area), vbox); gtk_container_set_border_width(GTK_CONTAINER(content_area), 8); proj->peak_vbox = vbox; hbox = gtk_hbox_new(FALSE, 0.0); gtk_box_pack_start(GTK_BOX(vbox), GTK_WIDGET(hbox), FALSE, FALSE, 8.0); label = gtk_label_new("Peak search algorithm"); gtk_misc_set_alignment(GTK_MISC(label), 1.0, 0.5); gtk_box_pack_start(GTK_BOX(hbox), GTK_WIDGET(label), FALSE, FALSE, 2.0); combo = gtk_combo_box_text_new(); gtk_box_pack_start(GTK_BOX(hbox), GTK_WIDGET(combo), TRUE, TRUE, 2.0); gtk_combo_box_text_append(GTK_COMBO_BOX_TEXT(combo), "zaef", "Zaefferer gradient search (zaef)"); gtk_combo_box_text_append(GTK_COMBO_BOX_TEXT(combo), "cxi", "Get list from CXI file"); gtk_combo_box_text_append(GTK_COMBO_BOX_TEXT(combo), "hdf5", "Get list from HDF5 file"); gtk_combo_box_text_append(GTK_COMBO_BOX_TEXT(combo), "peakfinder8", "Radial background estimation (peakfinder8)"); #ifdef HAVE_FDIP gtk_combo_box_text_append(GTK_COMBO_BOX_TEXT(combo), "peakfinder9", "Local background estimation (peakfinder9)"); #endif g_signal_connect(G_OBJECT(combo), "changed", G_CALLBACK(peaksearch_algo_changed), proj); gtk_combo_box_set_active(GTK_COMBO_BOX(combo), 0); proj->type_combo = combo; gtk_widget_show_all(dialog); return FALSE; }