/* * centering_check.c * * Check that centering of cells works * * Copyright © 2012 Thomas White * * This file is part of CrystFEL. * * CrystFEL is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * CrystFEL is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with CrystFEL. If not, see . * */ #ifdef HAVE_CONFIG_H #include #endif #include #include #include #include #include static int check_cell(UnitCell *cell, const char *text) { int err = 0; if ( !cell_is_sensible(cell) ) { ERROR(" %s unit cell parameters are not sensible.\n", text); err = 1; } if ( !bravais_lattice(cell) ) { ERROR(" %s unit cell is not a conventional Bravais" " lattice.\n", text); err = 1; } if ( !right_handed(cell) ) { ERROR(" %s unit cell is not right handed.\n", text); err = 1; } if ( err ) cell_print(cell); return err; } static int check_centering(double a, double b, double c, double al, double be, double ga, LatticeType latt, char cen, char ua) { UnitCell *cell; UnitCell *n; UnitCellTransformation *t; int fail = 0; STATUS("Checking %s %c (ua %c) %5.2e %5.2e %5.2e %5.2f %5.2f %5.2f\n", str_lattice(latt), cen, ua, a, b, c, al, be, ga); cell = cell_new_from_parameters(a, b, c, deg2rad(al), deg2rad(be), deg2rad(ga)); cell_set_lattice_type(cell, latt); cell_set_centering(cell, cen); cell_set_unique_axis(cell, ua); if ( check_cell(cell, "Input") ) fail = 1; //cell_print(cell); n = uncenter_cell(cell, &t); if ( n != NULL ) { if ( check_cell(n, "Output") ) fail = 1; } else { fail = 1; } STATUS("Transformation was:\n"); tfn_print(t); if ( fail ) ERROR("\n"); return fail; } int main(int argc, char *argv[]) { int fail = 0; /* Triclinic P */ fail += check_centering(50e-10, 55e-10, 70e-10, 67.0, 70.0, 77.0, L_TRICLINIC, 'P', '*'); /* Monoclinic P */ fail += check_centering(10e-10, 20e-10, 30e-10, 100.0, 90.0, 90.0, L_MONOCLINIC, 'P', 'a'); fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 100.0, 90.0, L_MONOCLINIC, 'P', 'b'); fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 100.0, L_MONOCLINIC, 'P', 'c'); /* Monoclinic A */ fail += check_centering(10e-10, 20e-10, 30e-10, 100.0, 90.0, 90.0, L_MONOCLINIC, 'A', 'a'); /* Monoclinic B */ fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 100.0, 90.0, L_MONOCLINIC, 'B', 'b'); /* Monoclinic C */ fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 100.0, L_MONOCLINIC, 'C', 'c'); /* Orthorhombic P */ fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_ORTHORHOMBIC, 'P', '*'); /* Orthorhombic A */ fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_ORTHORHOMBIC, 'A', '*'); /* Orthorhombic B */ fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_ORTHORHOMBIC, 'B', '*'); /* Orthorhombic C */ fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_ORTHORHOMBIC, 'C', '*'); /* Orthorhombic I */ fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_ORTHORHOMBIC, 'I', '*'); /* Orthorhombic F */ fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_ORTHORHOMBIC, 'F', '*'); /* Tetragonal P */ fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_TETRAGONAL, 'P', 'a'); fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_TETRAGONAL, 'P', 'b'); fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_TETRAGONAL, 'P', 'c'); /* Tetragonal I */ fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_TETRAGONAL, 'I', 'a'); fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_TETRAGONAL, 'I', 'b'); fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 90.0, L_TETRAGONAL, 'I', 'c'); /* Rhombohedral R */ fail += check_centering(10e-10, 10e-10, 10e-10, 60.0, 60.0, 60.0, L_RHOMBOHEDRAL, 'R', '*'); /* Hexagonal P */ fail += check_centering(10e-10, 20e-10, 30e-10, 120.0, 90.0, 90.0, L_HEXAGONAL, 'P', 'a'); fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 120.0, 90.0, L_HEXAGONAL, 'P', 'b'); fail += check_centering(10e-10, 20e-10, 30e-10, 90.0, 90.0, 120.0, L_HEXAGONAL, 'P', 'c'); /* Hexagonal H (PDB-speak for rhombohedral) */ fail += check_centering(40e-10, 20e-10, 20e-10, 120.0, 90.0, 90.0, L_HEXAGONAL, 'H', 'a'); fail += check_centering(20e-10, 40e-10, 20e-10, 90.0, 120.0, 90.0, L_HEXAGONAL, 'H', 'b'); fail += check_centering(20e-10, 20e-10, 40e-10, 90.0, 90.0, 120.0, L_HEXAGONAL, 'H', 'c'); /* Cubic P */ fail += check_centering(30e-10, 30e-10, 30e-10, 90.0, 90.0, 90.0, L_CUBIC, 'P', '*'); /* Cubic I */ fail += check_centering(30e-10, 30e-10, 30e-10, 90.0, 90.0, 90.0, L_CUBIC, 'I', '*'); /* Cubic F */ fail += check_centering(30e-10, 30e-10, 30e-10, 90.0, 90.0, 90.0, L_CUBIC, 'F', '*'); return fail; }