Add skeleton prealignment procedure

git-svn-id: svn://cook.msm.cam.ac.uk:745/diff-tomo/dtr@79 bf6ca9ba-c028-0410-8290-897cf20841d1

1 files changed, 3 insertions, 3 deletions

diff --git a/src/reproject.c b/src/reproject.c
index f3c3480..bec9a31 100644
--- a/src/reproject.c
+++ b/src/reproject.c
@@ -81,7 +81,7 @@ ImageReflection *reproject_get_reflections(ImageRecord image, size_t *n, Reflect
 			ydd = (yddd/cos(tilt) - zddd*tan(tilt)/cos(tilt))/(1+tan(tilt)*tan(tilt));
 			zdd = (-zddd-ydd*sin(tilt))/cos(tilt);
 			
-			yd = (ydd-xdd*tan(omega))/(sin(omega)*tan(omega)+cos(omega));
+			yd = (ydd-xdd*tan(omega))/(sin(omega)*tan(omega)+cos(omega));	/* Needs to be done first */
 			xd = (xdd+yd*sin(omega))/cos(omega);
 			zd = zdd;
 			
@@ -117,7 +117,7 @@ ImageReflection *reproject_get_reflections(ImageRecord image, size_t *n, Reflect
 					break;
 				}
 				
-				printf("Reflection %i at %i,%i\n", i, refl[i-1].x, refl[i-1].y);
+				//printf("Reflection %i at %i,%i\n", i, refl[i-1].x, refl[i-1].y);
 			
 			} else {
 				//fprintf(stderr, "Reflection failed sanity test (x=%f, y=%f)\n", x, y);
@@ -129,7 +129,7 @@ ImageReflection *reproject_get_reflections(ImageRecord image, size_t *n, Reflect
 
 	} while ( reflection );
 	
-	printf("Found %i reflections in image\n", i);
+	//printf("Found %i reflections in image\n", i);
 	*n = i;
 	return refl;