diff options
| author | Thomas White <taw@physics.org> | 2018-05-17 14:38:07 +0200 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2018-05-17 14:38:17 +0200 |
| commit | 4d9926e230ad3c550d69f78f6e4d95c555fe7639 (patch) | |
| tree | 43d8fc0523a065bfe4157ba1a1ffa634b9322a5d | |
| parent | e11df1c6baa882da803a25d1e978dedd31f30d3b (diff) | |
Update reference docs
| -rw-r--r-- | doc/reference/libcrystfel/CrystFEL-sections.txt | 40 |
1 files changed, 34 insertions, 6 deletions
diff --git a/doc/reference/libcrystfel/CrystFEL-sections.txt b/doc/reference/libcrystfel/CrystFEL-sections.txt index 206ba4df..4a436e34 100644 --- a/doc/reference/libcrystfel/CrystFEL-sections.txt +++ b/doc/reference/libcrystfel/CrystFEL-sections.txt @@ -15,7 +15,9 @@ add_refl add_refl_to_list <SUBSECTION> first_refl +first_refl_const next_refl +next_refl_const <SUBSECTION> find_refl next_found_refl @@ -24,7 +26,6 @@ get_detector_pos get_panel get_partiality get_lorentz -get_partial get_indices get_symmetric_indices get_intensity @@ -36,12 +37,14 @@ get_peak get_temp1 get_temp2 get_flag +get_exerr +get_khalf +get_kpred <SUBSECTION> set_detector_pos set_panel set_partiality set_lorentz -set_partial set_intensity set_redundancy set_esd_intensity @@ -52,6 +55,9 @@ set_symmetric_indices set_temp1 set_temp2 set_flag +set_exerr +set_khalf +set_kpred <SUBSECTION> copy_data num_reflections @@ -130,6 +136,7 @@ rotate_cell cell_print resolution match_cell +compare_cells match_cell_ab cell_is_sensible validate_cell @@ -143,6 +150,7 @@ load_cell_from_file write_cell lattice_from_str cell_get_volume +transform_cell_gsl </SECTION> <SECTION> @@ -228,6 +236,7 @@ imagefile_get_type imagefile_open imagefile_read imagefile_read_simple +is_cbf_file <SUBSECTION> new_imagefile_field_list add_imagefile_field @@ -276,34 +285,48 @@ stat_scale_intensity <FILE>indexing</FILE> IndexingMethod IndexingPrivate +IndexingFlags INDEXING_DEFAULTS_DIRAX INDEXING_DEFAULTS_MOSFLM INDEXING_DEFAULTS_XDS INDEXING_DEFAULTS_ASDF INDEXING_DEFAULTS_FELIX +INDEXING_DEFAULTS_TAKETWO INDEXING_METHOD_MASK -INDEXING_CONTROL_FLAGS +detect_indexing_methods setup_indexing cleanup_indexing get_indm_from_string +get_indm_from_string_2 index_pattern index_pattern_2 indexer_str +dirax_probe dirax_prepare run_dirax dirax_cleanup +mosflm_probe mosflm_prepare run_mosflm mosflm_cleanup +xds_probe xds_prepare run_xds xds_cleanup +asdf_probe asdf_prepare run_asdf asdf_cleanup +felix_options +felix_probe felix_prepare felix_index felix_cleanup +taketwo_options +taketwo_probe +taketwo_prepare +taketwo_index +taketwo_cleanup </SECTION> <SECTION> @@ -470,6 +493,7 @@ crystal_copy crystal_free <SUBSECTION> crystal_get_cell +crystal_get_cell_const crystal_get_image crystal_get_mosaicity crystal_get_num_saturated_reflections @@ -502,9 +526,9 @@ crystal_set_det_shift <FILE>geometry</FILE> PartialityModel gparam -find_intersections -find_intersections_to_res -update_partialities +predict_to_res +update_predictions +calculate_partialities polarisation_correction sphere_fraction gaussian_fraction @@ -547,6 +571,7 @@ integrate_all integrate_all_2 integrate_all_3 integrate_all_4 +integrate_all_5 integration_method </SECTION> @@ -571,6 +596,7 @@ open_stream_for_read open_stream_for_write open_stream_for_write_2 open_stream_for_write_3 +open_stream_for_write_4 get_stream_fd close_stream read_chunk @@ -582,6 +608,8 @@ is_stream write_command write_geometry_file stuff_from_stream +stream_audit_info +stream_has_old_indexers </SECTION> <SECTION> |