Use gtk-doc for libcrystfel only (not the contents of src)

1 files changed, 0 insertions, 329 deletions

diff --git a/doc/reference/CrystFEL-sections.txt b/doc/reference/CrystFEL-sections.txt
deleted file mode 100644
index 5df1f2d5..00000000
--- a/doc/reference/CrystFEL-sections.txt
+++ /dev/null
@@ -1,329 +0,0 @@
-<SECTION>
-<FILE>reflist</FILE>
-RefList
-Reflection
-RefListIterator
-<SUBSECTION>
-reflist_new
-reflist_free
-reflection_new
-reflection_free
-<SUBSECTION>
-add_refl
-add_refl_to_list
-<SUBSECTION>
-first_refl
-next_refl
-<SUBSECTION>
-find_refl
-next_found_refl
-<SUBSECTION>
-get_excitation_error
-get_detector_pos
-get_partiality
-get_indices
-get_symmetric_indices
-get_intensity
-get_partial
-get_scalable
-get_refinable
-get_redundancy
-get_esd_intensity
-get_phase
-get_temp1
-get_temp2
-<SUBSECTION>
-set_detector_pos
-set_partial
-set_intensity
-set_scalable
-set_refinable
-set_redundancy
-set_esd_intensity
-set_phase
-set_symmetric_indices
-set_temp1
-set_temp2
-<SUBSECTION>
-copy_data
-num_reflections
-tree_depth
-lock_reflection
-unlock_reflection
-</SECTION>
-
-<SECTION>
-<FILE>reflist-utils</FILE>
-write_reflist
-write_reflections_to_file
-read_reflections
-read_reflections_from_file
-asymmetric_indices
-res_cutoff
-check_list_symmetry
-copy_reflist
-find_equiv_in_list
-</SECTION>
-
-<SECTION>
-<FILE>unitcell</FILE>
-UnitCell
-LatticeType
-UnitCellTransformation
-<SUBSECTION>
-cell_new
-cell_new_from_cell
-cell_new_from_direct_axes
-cell_new_from_parameters
-cell_new_from_reciprocal_axes
-cell_free
-<SUBSECTION>
-cell_get_cartesian
-cell_get_parameters
-cell_get_pointgroup
-cell_get_reciprocal
-cell_get_centering
-cell_get_lattice_type
-cell_get_unique_axis
-<SUBSECTION>
-cell_set_cartesian
-cell_set_cartesian_a
-cell_set_cartesian_b
-cell_set_cartesian_c
-cell_set_parameters
-cell_set_pointgroup
-cell_set_reciprocal
-cell_set_centering
-cell_set_lattice_type
-cell_set_unique_axis
-<SUBSECTION>
-cell_transform
-cell_transform_inverse
-tfn_combine
-tfn_identity
-tfn_from_intmat
-tfn_inverse
-tfn_print
-tfn_vector
-tfn_free
-<SUBSECTION>
-
-cell_rep
-</SECTION>
-
-<SECTION>
-<FILE>cell-utils</FILE>
-cell_rotate
-rotate_cell
-cell_print
-resolution
-match_cell
-match_cell_ab
-cell_is_sensible
-validate_cell
-uncenter_cell
-bravais_lattice
-right_handed
-str_lattice
-forbidden_reflection
-load_cell_from_pdb
-</SECTION>
-
-<SECTION>
-<FILE>utils</FILE>
-show_matrix_eqn
-AssplodeFlag
-C_VACUO
-ELECTRON_CHARGE
-ERROR
-J_to_eV
-PLANCK
-STATUS
-THOMSON_LENGTH
-assplode
-biggest
-check_prefix
-chomp
-deg2rad
-eV_to_J
-gaussian_noise
-safe_basename
-progress_bar
-rad2deg
-is_odd
-poisson_noise
-notrail
-smallest
-ph_en_to_lambda
-ph_lambda_to_en
-</SECTION>
-
-<SECTION>
-<FILE>quaternion</FILE>
-quaternion
-<SUBSECTION>
-quaternion_modulus
-normalise_quaternion
-random_quaternion
-quaternion_valid
-quat_rot
-</SECTION>
-
-<SECTION>
-<FILE>image</FILE>
-image
-ImageFeatureList
-image_add_feature
-image_feature_closest
-image_feature_count
-image_feature_list_free
-image_feature_list_new
-image_get_feature
-image_remove_feature
-</SECTION>
-
-<SECTION>
-<FILE>thread-pool</FILE>
-TPGetTaskFunc
-TPWorkFunc
-TPFinalFunc
-<SUBSECTION>
-run_threads
-</SECTION>
-
-<SECTION>
-<FILE>statistics</FILE>
-stat_pearson_f_ignore
-stat_pearson_f_zero
-stat_pearson_i
-stat_r1_i
-stat_r1_ignore
-stat_r1_zero
-stat_r2
-stat_rdiff_ignore
-stat_rdiff_intensity
-stat_rdiff_zero
-stat_scale_intensity
-</SECTION>
-
-<SECTION>
-<FILE>indexing</FILE>
-IndexingMethod
-IndexingPrivate
-MAX_CELL_CANDIDATES
-build_indexer_list
-cleanup_indexing
-prepare_indexing
-index_pattern
-run_dirax
-run_mosflm
-map_all_peaks
-</SECTION>
-
-<SECTION>
-<FILE>symmetry</FILE>
-SymOpList
-SymOpMask
-<SUBSECTION>
-free_symoplist
-num_equivs
-get_pointgroup
-get_equiv
-special_position
-get_asymm
-get_ambiguities
-is_subgroup
-<SUBSECTION>
-new_symopmask
-free_symopmask
-<SUBSECTION>
-describe_symmetry
-symmetry_name
-is_centrosymmetric
-</SECTION>
-
-<SECTION>
-<FILE>integer_matrix</FILE>
-IntegerMatrix
-<SUBSECTION>
-intmat_new
-intmat_copy
-intmat_free
-<SUBSECTION>
-intmat_get
-intmat_set
-<SUBSECTION>
-intmat_intmat_mult
-intmat_intvec_mult
-intmat_det
-intmat_inverse
-<SUBSECTION>
-intmat_equals
-intmat_is_identity
-intmat_is_inversion
-<SUBSECTION>
-intmat_print
-</SECTION>
-
-<SECTION>
-<FILE>detector</FILE>
-copy_geom
-fill_in_values
-free_detector_geometry
-get_detector_geometry
-write_detector_geometry
-find_panel
-find_panel_by_name
-find_panel_number
-simple_geometry
-record_image
-get_pixel_extents
-get_q
-get_q_for_panel
-get_tt
-smallest_q
-reverse_2d_mapping
-largest_q
-</SECTION>
-
-<SECTION>
-<FILE>crystal</FILE>
-Crystal
-crystal_new
-crystal_free
-</SECTION>
-
-<SECTION>
-<FILE>hdf5-file</FILE>
-hdf5_read
-hdf5_write
-hdfile
-hdfile_close
-hdfile_get_image_binned
-hdfile_get_string_value
-hdfile_open
-hdfile_read_group
-hdfile_set_first_image
-hdfile_set_image
-</SECTION>
-
-<SECTION>
-<FILE>stream</FILE>
-parse_stream_flags
-read_chunk
-write_chunk
-write_stream_header
-skip_some_files
-is_stream
-get_value
-count_patterns
-</SECTION>
-
-<SECTION>
-<FILE>render</FILE>
-render_get_colour_scale
-render_panels
-render_scale
-render_tiff_fp
-render_tiff_int16
-</SECTION>