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authorThomas White <taw@physics.org>2014-03-28 15:23:24 +0100
committerThomas White <taw@physics.org>2014-03-28 15:23:24 +0100
commit42113f1a6f1283e230182b1a6a0d2cb44a6ef3aa (patch)
tree668fc2bbd25dbb57957c5f28eb5c001354e8d8dd /libcrystfel/src
parent9f6233c33890008ca4a7d5bb8de271acbf9b9c49 (diff)
Require at least two bright pixels in integration box before moving centre
Diffstat (limited to 'libcrystfel/src')
-rw-r--r--libcrystfel/src/integration.c9
1 files changed, 8 insertions, 1 deletions
diff --git a/libcrystfel/src/integration.c b/libcrystfel/src/integration.c
index 14d97a2e..e753dea9 100644
--- a/libcrystfel/src/integration.c
+++ b/libcrystfel/src/integration.c
@@ -937,7 +937,7 @@ static double fit_J(struct intcontext *ic, struct peak_box *bx)
static int center_and_check_box(struct intcontext *ic, struct peak_box *bx,
int *sat)
{
- int i;
+ int i, nstrong;
bx->offs_fs = 0.0;
bx->offs_ss = 0.0;
@@ -945,6 +945,7 @@ static int center_and_check_box(struct intcontext *ic, struct peak_box *bx,
if ( check_box(ic, bx, sat) ) return 1;
fit_bg(ic, bx);
+ nstrong = 0;
for ( i=0; i<10; i++ ) {
int p, q;
@@ -965,6 +966,7 @@ static int center_and_check_box(struct intcontext *ic, struct peak_box *bx,
bg = bx->a*p + bx->b*q + bx->c;
if ( bi <= 3.0*bg ) continue;
+ nstrong++;
if ( bi > max ) {
max = bi;
@@ -975,6 +977,11 @@ static int center_and_check_box(struct intcontext *ic, struct peak_box *bx,
}
}
+ /* We require at least two bright pixels in the peak region,
+ * otherwise we might just be centering on a pixel which is
+ * just at the tail of the distribution */
+ if ( nstrong < 2 ) return 0;
+
bx->offs_fs += ifs;
bx->offs_ss += iss;
bx->cfs += ifs;