Move indexer sandbox to a new file

1 files changed, 86 insertions, 0 deletions

diff --git a/src/im-sandbox.h b/src/im-sandbox.h
new file mode 100644
index 00000000..8ad9fd90
--- /dev/null
+++ b/src/im-sandbox.h
@@ -0,0 +1,86 @@
+/*
+ * im-sandbox.h
+ *
+ * Sandbox for indexing
+ *
+ * Copyright © 2012 Deutsches Elektronen-Synchrotron DESY,
+ *                  a research centre of the Helmholtz Association.
+ * Copyright © 2012 Richard Kirian
+ * Copyright © 2012 Lorenzo Galli
+ *
+ * Authors:
+ *   2010-2012 Thomas White <taw@physics.org>
+ *   2011      Richard Kirian
+ *   2012      Lorenzo Galli
+ *   2012      Chunhong Yoon
+ *
+ * This file is part of CrystFEL.
+ *
+ * CrystFEL is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * CrystFEL is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with CrystFEL.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+
+enum {
+	PEAK_ZAEF,
+	PEAK_HDF5,
+};
+
+
+/* Information about the indexing process which is common to all patterns */
+struct index_args
+{
+	UnitCell *cell;
+	int config_cmfilter;
+	int config_noisefilter;
+	int config_verbose;
+	int stream_flags;         /* What goes into the output? */
+	int config_satcorr;
+	int config_closer;
+	int config_insane;
+	int config_bgsub;
+	float threshold;
+	float min_gradient;
+	float min_snr;
+	double min_int_snr;
+	struct detector *det;
+	IndexingMethod *indm;
+	IndexingPrivate **ipriv;
+	int peaks;                /* Peak detection method */
+	int cellr;
+	float tols[4];
+	struct beam_params *beam;
+	char *element;
+	char *hdf5_peak_path;
+	double ir_inn;
+	double ir_mid;
+	double ir_out;
+	struct copy_hdf5_field *copyme;
+};
+
+
+
+
+/* Information about the indexing process for one pattern */
+struct pattern_args
+{
+	/* "Input" */
+	char *filename;
+
+	/* "Output" */
+	int indexable;
+};
+
+extern void create_sandbox(struct index_args *iargs, int n_proc, char *prefix,
+                           int config_basename, FILE *fh,
+                           char *use_this_one_instead, FILE *ofh);