diff options
| author | Thomas White <taw@physics.org> | 2016-08-10 12:09:33 +0200 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2016-08-10 12:09:33 +0200 |
| commit | dd5d51821a47a822a3c707143ff3979e566cfbbb (patch) | |
| tree | 801edd7e95df6e93ae7d1319171c024e8e047bd5 /src/indexamajig.c | |
| parent | 838283a04af3338799acdd5eba79ce3b3042635a (diff) | |
Allow peak table location to be given in geometry file
Diffstat (limited to 'src/indexamajig.c')
| -rw-r--r-- | src/indexamajig.c | 30 |
1 files changed, 20 insertions, 10 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index 9b32900f..a1997b9e 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -200,6 +200,7 @@ int main(int argc, char *argv[]) int have_push_res = 0; int len; int no_refine = 0; + char *command_line_peak_path = NULL; /* Defaults */ iargs.cell = NULL; @@ -394,8 +395,8 @@ int main(int argc, char *argv[]) break; case 9 : - free(iargs.hdf5_peak_path); - iargs.hdf5_peak_path = strdup(optarg); + free(command_line_peak_path); + command_line_peak_path = strdup(optarg); break; case 10 : @@ -549,13 +550,6 @@ int main(int argc, char *argv[]) return 1; } free(speaks); - if ( iargs.hdf5_peak_path == NULL ) { - if ( iargs.peaks == PEAK_HDF5 ) { - iargs.hdf5_peak_path = strdup("/processing/hitfinder/peakinfo"); - } else if ( iargs.peaks == PEAK_CXI ) { - iargs.hdf5_peak_path = strdup("/entry_1/result_1"); - } - } /* Check prefix (if given) */ if ( prefix == NULL ) { @@ -573,7 +567,8 @@ int main(int argc, char *argv[]) } /* Load detector geometry */ - iargs.det = get_detector_geometry(geom_filename, iargs.beam); + iargs.det = get_detector_geometry_2(geom_filename, iargs.beam, + &iargs.hdf5_peak_path); if ( iargs.det == NULL ) { ERROR("Failed to read detector geometry from '%s'\n", geom_filename); @@ -581,6 +576,21 @@ int main(int argc, char *argv[]) } add_geom_beam_stuff_to_copy_hdf5(iargs.copyme, iargs.det, iargs.beam); + /* If no peak path from geometry file, use these (but see later) */ + if ( iargs.hdf5_peak_path == NULL ) { + if ( iargs.peaks == PEAK_HDF5 ) { + iargs.hdf5_peak_path = strdup("/processing/hitfinder/peakinfo"); + } else if ( iargs.peaks == PEAK_CXI ) { + iargs.hdf5_peak_path = strdup("/entry_1/result_1"); + } + } + + /* If an HDF5 peak path was given on the command line, use it */ + if ( command_line_peak_path != NULL ) { + free(iargs.hdf5_peak_path); + iargs.hdf5_peak_path = command_line_peak_path; + } + /* Parse indexing methods */ if ( indm_str == NULL ) { |