Move processing pipeline to separate file

1 files changed, 94 insertions, 0 deletions

diff --git a/src/process_image.h b/src/process_image.h
new file mode 100644
index 00000000..f2f034d9
--- /dev/null
+++ b/src/process_image.h
@@ -0,0 +1,94 @@
+/*
+ * process_image.h
+ *
+ * The processing pipeline for one image
+ *
+ * Copyright © 2012-2013 Deutsches Elektronen-Synchrotron DESY,
+ *                       a research centre of the Helmholtz Association.
+ *
+ * Authors:
+ *   2010-2013 Thomas White <taw@physics.org>
+ *
+ * This file is part of CrystFEL.
+ *
+ * CrystFEL is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * CrystFEL is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with CrystFEL.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+
+#ifndef PROCESS_IMAGE_H
+#define PROCESS_IMAGE_H
+
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
+
+enum {
+	PEAK_ZAEF,
+	PEAK_HDF5,
+};
+
+
+/* Information about the indexing process which is common to all patterns */
+struct index_args
+{
+	UnitCell *cell;
+	int cmfilter;
+	int noisefilter;
+	int satcorr;
+	int closer;
+	int bgsub;
+	float threshold;
+	float min_gradient;
+	float min_snr;
+	double min_int_snr;
+	struct detector *det;
+	IndexingMethod *indm;
+	IndexingPrivate **ipriv;
+	int peaks;                /* Peak detection method */
+	float tols[4];
+	struct beam_params *beam;
+	char *element;
+	char *hdf5_peak_path;
+	float ir_inn;
+	float ir_mid;
+	float ir_out;
+	struct copy_hdf5_field *copyme;
+	int integrate_saturated;
+	int use_saturated;
+	int no_revalidate;
+	int integrate_found;
+	int stream_peaks;
+	int stream_refls;
+	int res_cutoff;
+};
+
+
+/* Information about the indexing process for one pattern */
+struct pattern_args
+{
+	/* "Input" */
+	char *filename;
+
+	/* "Output" */
+	int n_crystals;
+};
+
+
+extern void process_image(const struct index_args *iargs,
+                          struct pattern_args *pargs, Stream *st,
+                          int cookie);
+
+
+#endif	/* PROCESS_IMAGEs_H */