diff options
author | Thomas White <taw@physics.org> | 2011-03-16 18:23:48 +0100 |
---|---|---|
committer | Thomas White <taw@physics.org> | 2012-02-22 15:27:20 +0100 |
commit | 86e621ad289638d7bf1440092cffd4c2ac64f982 (patch) | |
tree | 0abc051952d4d7d581bfe7b2d7403972ebd7327f /src/statistics.c | |
parent | eaee0f6415b06f40ff7f477328f9f26f01c4d7ec (diff) |
Remove old reflections.h
Diffstat (limited to 'src/statistics.c')
-rw-r--r-- | src/statistics.c | 385 |
1 files changed, 215 insertions, 170 deletions
diff --git a/src/statistics.c b/src/statistics.c index d0d3ae85..77e7919f 100644 --- a/src/statistics.c +++ b/src/statistics.c @@ -25,9 +25,8 @@ struct r_params { - const double *ref1; - const double *ref2; - ReflItemList *items; /* Which reflections to use */ + RefList *list1; + RefList *list2; int fom; /* Which FoM to use (see the enum just below) */ }; @@ -43,27 +42,30 @@ enum { /* Return the least squares optimal scaling factor when comparing intensities. - * ref1,ref2 are the two intensity lists to compare. "items" is a ReflItemList + * list1,list2 are the two intensity lists to compare. "items" is a ReflItemList * containing the reflections which should be taken into account. */ -double stat_scale_intensity(const double *ref1, const double *ref2, - ReflItemList *items) +double stat_scale_intensity(RefList *list1, RefList *list2) { double top = 0.0; double bot = 0.0; - int i; + Reflection *refl1; + RefListIterator *iter; - for ( i=0; i<num_items(items); i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { double i1, i2; - struct refl_item *it; signed int h, k, l; + Reflection *refl2; - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ - i1 = lookup_intensity(ref1, h, k, l); - i2 = lookup_intensity(ref2, h, k, l); + i1 = get_intensity(refl1); + i2 = get_intensity(refl2); top += i1 * i2; bot += i2 * i2; @@ -77,30 +79,36 @@ double stat_scale_intensity(const double *ref1, const double *ref2, /* Return the least squares optimal scaling factor when comparing the square * roots of the intensities (i.e. one approximation to the structure factor * moduli). - * ref1,ref2 are the two intensity lists to compare (they contain intensities, + * list1,list2 are the two intensity lists to compare (they contain intensities, * not square rooted intensities). "items" is a ReflItemList containing the * reflections which should be taken into account. */ -static double stat_scale_sqrti(const double *ref1, const double *ref2, - ReflItemList *items) +static double stat_scale_sqrti(RefList *list1, RefList *list2) { double top = 0.0; double bot = 0.0; - int i; + Reflection *refl1; + RefListIterator *iter; - for ( i=0; i<num_items(items); i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { - double i1, i2, f1, f2; - struct refl_item *it; + double i1, i2; + double f1, f2; signed int h, k, l; + Reflection *refl2; + + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + i1 = get_intensity(refl1); + i2 = get_intensity(refl2); - i1 = lookup_intensity(ref1, h, k, l); if ( i1 < 0.0 ) continue; f1 = sqrt(i1); - i2 = lookup_intensity(ref2, h, k, l); + if ( i2 < 0.0 ) continue; f2 = sqrt(i2); @@ -113,26 +121,33 @@ static double stat_scale_sqrti(const double *ref1, const double *ref2, } -static double internal_r1_ignorenegs(const double *ref1, const double *ref2, - ReflItemList *items, double scale) +static double internal_r1_ignorenegs(RefList *list1, RefList *list2, + double scale) { double top = 0.0; double bot = 0.0; - int i; + Reflection *refl1; + RefListIterator *iter; - for ( i=0; i<num_items(items); i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { - double i1, f1, i2, f2; - struct refl_item *it; + double i1, i2; + double f1, f2; signed int h, k, l; + Reflection *refl2; + + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + i1 = get_intensity(refl1); + i2 = get_intensity(refl2); - i1 = lookup_intensity(ref1, h, k, l); if ( i1 < 0.0 ) continue; f1 = sqrt(i1); - i2 = lookup_intensity(ref2, h, k, l); + if ( i2 < 0.0 ) continue; f2 = sqrt(i2); f2 *= scale; @@ -146,25 +161,32 @@ static double internal_r1_ignorenegs(const double *ref1, const double *ref2, } -static double internal_r1_negstozero(const double *ref1, const double *ref2, - ReflItemList *items, double scale) +static double internal_r1_negstozero(RefList *list1, RefList *list2, + double scale) { double top = 0.0; double bot = 0.0; - int i; + Reflection *refl1; + RefListIterator *iter; - for ( i=0; i<num_items(items); i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { - double i1, f1, i2, f2; - struct refl_item *it; + double i1, i2; + double f1, f2; signed int h, k, l; + Reflection *refl2; + + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + i1 = get_intensity(refl1); + i2 = get_intensity(refl2); - i1 = lookup_intensity(ref1, h, k, l); f1 = i1 > 0.0 ? sqrt(i1) : 0.0; - i2 = lookup_intensity(ref2, h, k, l); + f2 = i2 > 0.0 ? sqrt(i2) : 0.0; f2 *= scale; @@ -177,24 +199,27 @@ static double internal_r1_negstozero(const double *ref1, const double *ref2, } -static double internal_r2(const double *ref1, const double *ref2, - ReflItemList *items, double scale) +static double internal_r2(RefList *list1, RefList *list2, double scale) { double top = 0.0; double bot = 0.0; - int i; + Reflection *refl1; + RefListIterator *iter; - for ( i=0; i<num_items(items); i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { double i1, i2; - struct refl_item *it; signed int h, k, l; + Reflection *refl2; - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ - i1 = lookup_intensity(ref1, h, k, l); - i2 = scale * lookup_intensity(ref2, h, k, l); + i1 = get_intensity(refl1); + i2 = scale * get_intensity(refl2); top += pow(i1 - i2, 2.0); bot += pow(i1, 2.0); @@ -205,24 +230,27 @@ static double internal_r2(const double *ref1, const double *ref2, } -static double internal_r_i(const double *ref1, const double *ref2, - ReflItemList *items, double scale) +static double internal_r_i(RefList *list1, RefList *list2, double scale) { double top = 0.0; double bot = 0.0; - int i; + Reflection *refl1; + RefListIterator *iter; - for ( i=0; i<num_items(items); i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { double i1, i2; - struct refl_item *it; signed int h, k, l; + Reflection *refl2; - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ - i1 = lookup_intensity(ref1, h, k, l); - i2 = scale * lookup_intensity(ref2, h, k, l); + i1 = get_intensity(refl1); + i2 = scale * get_intensity(refl2); top += fabs(i1-i2); bot += fabs(i1); @@ -233,24 +261,29 @@ static double internal_r_i(const double *ref1, const double *ref2, } -static double internal_rdiff_intensity(const double *ref1, const double *ref2, - ReflItemList *items, double scale) +static double internal_rdiff_intensity(RefList *list1, RefList *list2, + double scale) { double top = 0.0; double bot = 0.0; - int i; + Reflection *refl1; + RefListIterator *iter; - for ( i=0; i<num_items(items); i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { double i1, i2; - struct refl_item *it; signed int h, k, l; + Reflection *refl2; - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ + + i1 = get_intensity(refl1); + i2 = get_intensity(refl2); - i1 = lookup_intensity(ref1, h, k, l); - i2 = lookup_intensity(ref2, h, k, l); i2 *= scale; top += fabs(i1 - i2); @@ -262,25 +295,32 @@ static double internal_rdiff_intensity(const double *ref1, const double *ref2, } -static double internal_rdiff_negstozero(const double *ref1, const double *ref2, - ReflItemList *items, double scale) +static double internal_rdiff_negstozero(RefList *list1, RefList *list2, + double scale) { double top = 0.0; double bot = 0.0; - int i; + Reflection *refl1; + RefListIterator *iter; - for ( i=0; i<num_items(items); i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { - double i1, i2, f1, f2; - struct refl_item *it; + double i1, i2; + double f1, f2; signed int h, k, l; + Reflection *refl2; - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ + + i1 = get_intensity(refl1); + i2 = get_intensity(refl2); - i1 = lookup_intensity(ref1, h, k, l); f1 = i1 > 0.0 ? sqrt(i1) : 0.0; - i2 = lookup_intensity(ref2, h, k, l); + f2 = i2 > 0.0 ? sqrt(i2) : 0.0; f2 *= scale; @@ -293,26 +333,33 @@ static double internal_rdiff_negstozero(const double *ref1, const double *ref2, } -static double internal_rdiff_ignorenegs(const double *ref1, const double *ref2, - ReflItemList *items, double scale) +static double internal_rdiff_ignorenegs(RefList *list1, RefList *list2, + double scale) { double top = 0.0; double bot = 0.0; - int i; + Reflection *refl1; + RefListIterator *iter; - for ( i=0; i<num_items(items); i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { - double i1, i2, f1, f2; - struct refl_item *it; + double i1, i2; + double f1, f2; signed int h, k, l; + Reflection *refl2; - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ + + i1 = get_intensity(refl1); + i2 = get_intensity(refl2); - i1 = lookup_intensity(ref1, h, k, l); if ( i1 < 0.0 ) continue; f1 = sqrt(i1); - i2 = lookup_intensity(ref2, h, k, l); + if ( i2 < 0.0 ) continue; f2 = sqrt(i2); f2 *= scale; @@ -332,26 +379,21 @@ static double calc_r(double scale, void *params) switch ( rp->fom) { case R_1_ZERO : - return internal_r1_negstozero(rp->ref1, rp->ref2, - rp->items, scale); + return internal_r1_negstozero(rp->list1, rp->list2, scale); case R_1_IGNORE : - return internal_r1_ignorenegs(rp->ref1, rp->ref2, - rp->items, scale); + return internal_r1_ignorenegs(rp->list1, rp->list2, scale); case R_2 : - return internal_r2(rp->ref1, rp->ref2, rp->items, scale); + return internal_r2(rp->list1, rp->list2, scale); case R_1_I : - return internal_r_i(rp->ref1, rp->ref2, rp->items, scale); + return internal_r_i(rp->list1, rp->list2, scale); case R_DIFF_ZERO : - return internal_rdiff_negstozero(rp->ref1, rp->ref2, - rp->items, scale); + return internal_rdiff_negstozero(rp->list1, rp->list2,scale); case R_DIFF_IGNORE : - return internal_rdiff_ignorenegs(rp->ref1, rp->ref2, - rp->items, scale); + return internal_rdiff_ignorenegs(rp->list1, rp->list2, scale); case R_DIFF_INTENSITY : - return internal_rdiff_intensity(rp->ref1, rp->ref2, - rp->items, scale); + return internal_rdiff_intensity(rp->list1, rp->list2, scale); } ERROR("No such FoM!\n"); @@ -359,8 +401,8 @@ static double calc_r(double scale, void *params) } -static double r_minimised(const double *ref1, const double *ref2, - ReflItemList *items, double *scalep, int fom) +static double r_minimised(RefList *list1, RefList *list2, + double *scalep, int fom) { gsl_function F; gsl_min_fminimizer *s; @@ -369,9 +411,8 @@ static double r_minimised(const double *ref1, const double *ref2, struct r_params rp; int iter = 0; - rp.ref1 = ref1; - rp.ref2 = ref2; - rp.items = items; + rp.list1 = list1; + rp.list2 = list2; rp.fom = fom; F.function = &calc_r; @@ -385,12 +426,12 @@ static double r_minimised(const double *ref1, const double *ref2, case R_1_IGNORE : case R_DIFF_ZERO : case R_DIFF_IGNORE : - scale = stat_scale_sqrti(ref1, ref2, items); + scale = stat_scale_sqrti(list1, list2); break; case R_2 : case R_1_I : case R_DIFF_INTENSITY : - scale = stat_scale_intensity(ref1, ref2, items); + scale = stat_scale_intensity(list1, list2); break; } //STATUS("Initial scale factor estimate: %5.2e\n", scale); @@ -429,77 +470,74 @@ static double r_minimised(const double *ref1, const double *ref2, } -double stat_r1_ignore(const double *ref1, const double *ref2, - ReflItemList *items, double *scalep) +double stat_r1_ignore(RefList *list1, RefList *list2, double *scalep) { - return r_minimised(ref1, ref2, items, scalep, R_1_IGNORE); + return r_minimised(list1, list2, scalep, R_1_IGNORE); } -double stat_r1_zero(const double *ref1, const double *ref2, - ReflItemList *items, double *scalep) +double stat_r1_zero(RefList *list1, RefList *list2, double *scalep) { - return r_minimised(ref1, ref2, items, scalep, R_1_ZERO); + return r_minimised(list1, list2, scalep, R_1_ZERO); } -double stat_r2(const double *ref1, const double *ref2, - ReflItemList *items, double *scalep) +double stat_r2(RefList *list1, RefList *list2, double *scalep) { - return r_minimised(ref1, ref2, items, scalep, R_2); + return r_minimised(list1, list2, scalep, R_2); } -double stat_r1_i(const double *ref1, const double *ref2, - ReflItemList *items, double *scalep) +double stat_r1_i(RefList *list1, RefList *list2, double *scalep) { - return r_minimised(ref1, ref2, items, scalep, R_1_I); + return r_minimised(list1, list2, scalep, R_1_I); } -double stat_rdiff_zero(const double *ref1, const double *ref2, - ReflItemList *items, double *scalep) +double stat_rdiff_zero(RefList *list1, RefList *list2, double *scalep) { - return r_minimised(ref1, ref2, items, scalep, R_DIFF_ZERO); + return r_minimised(list1, list2, scalep, R_DIFF_ZERO); } -double stat_rdiff_ignore(const double *ref1, const double *ref2, - ReflItemList *items, double *scalep) +double stat_rdiff_ignore(RefList *list1, RefList *list2, double *scalep) { - return r_minimised(ref1, ref2, items, scalep, R_DIFF_IGNORE); + return r_minimised(list1, list2, scalep, R_DIFF_IGNORE); } -double stat_rdiff_intensity(const double *ref1, const double *ref2, - ReflItemList *items, double *scalep) +double stat_rdiff_intensity(RefList *list1, RefList *list2, double *scalep) { - return r_minimised(ref1, ref2, items, scalep, R_DIFF_INTENSITY); + return r_minimised(list1, list2, scalep, R_DIFF_INTENSITY); } -double stat_pearson_i(const double *ref1, const double *ref2, - ReflItemList *items) + +double stat_pearson_i(RefList *list1, RefList *list2) { double *vec1, *vec2; - int i = 0; - int ni = num_items(items); + int ni = num_reflections(list1) + num_reflections(list2); double val; int nacc = 0; + Reflection *refl1; + RefListIterator *iter; vec1 = malloc(ni*sizeof(double)); vec2 = malloc(ni*sizeof(double)); - for ( i=0; i<ni; i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { double i1, i2; - struct refl_item *it; signed int h, k, l; + Reflection *refl2; - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ - i1 = lookup_intensity(ref1, h, k, l); - i2 = lookup_intensity(ref2, h, k, l); + i1 = get_intensity(refl1); + i2 = get_intensity(refl2); vec1[nacc] = i1; vec2[nacc] = i2; @@ -514,40 +552,42 @@ double stat_pearson_i(const double *ref1, const double *ref2, } -double stat_pearson_f_ignore(const double *ref1, const double *ref2, - ReflItemList *items) +double stat_pearson_f_ignore(RefList *list1, RefList *list2) { double *vec1, *vec2; - int i = 0; - int ni = num_items(items); + int ni = num_reflections(list1) + num_reflections(list2); double val; int nacc = 0; + Reflection *refl1; + RefListIterator *iter; vec1 = malloc(ni*sizeof(double)); vec2 = malloc(ni*sizeof(double)); - for ( i=0; i<ni; i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { - double i1, i2, f1, f2; - struct refl_item *it; + double i1, i2; + double f1, f2; signed int h, k, l; + Reflection *refl2; int ig = 0; - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ + + i1 = get_intensity(refl1); + i2 = get_intensity(refl2); - i1 = lookup_intensity(ref1, h, k, l); - if ( i1 < 0.0 ) { - ig=1; - } + if ( i1 < 0.0 ) ig = 1; f1 = sqrt(i1); - i2 = lookup_intensity(ref2, h, k, l); - if ( i2 < 0.0 ) { - ig=1; - } + + if ( i2 < 0.0 ) ig = 1; f2 = sqrt(i2); - if ( ig ) continue; + if ( ig ) continue; vec1[nacc] = f1; vec2[nacc] = f2; @@ -563,30 +603,35 @@ double stat_pearson_f_ignore(const double *ref1, const double *ref2, } -double stat_pearson_f_zero(const double *ref1, const double *ref2, - ReflItemList *items) +double stat_pearson_f_zero(RefList *list1, RefList *list2) { double *vec1, *vec2; - int i = 0; - int ni = num_items(items); + int ni = num_reflections(list1) + num_reflections(list2); double val; int nacc = 0; + Reflection *refl1; + RefListIterator *iter; vec1 = malloc(ni*sizeof(double)); vec2 = malloc(ni*sizeof(double)); - for ( i=0; i<ni; i++ ) { + for ( refl1 = first_refl(list1, &iter); + refl1 != NULL; + refl1 = next_refl(refl1, iter) ) { - double i1, i2, f1, f2; - struct refl_item *it; + double i1, i2; + double f1, f2; signed int h, k, l; + Reflection *refl2; + + get_indices(refl1, &h, &k, &l); + refl2 = find_refl(list2, h, k, l); + if ( refl2 == NULL ) continue; /* No common reflection */ - it = get_item(items, i); - h = it->h; k = it->k; l = it->l; + i1 = get_intensity(refl1); + i2 = get_intensity(refl2); - i1 = lookup_intensity(ref1, h, k, l); f1 = i1 > 0.0 ? sqrt(i1) : 0.0; - i2 = lookup_intensity(ref2, h, k, l); f2 = i2 > 0.0 ? sqrt(i2) : 0.0; vec1[nacc] = f1; |