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authorThomas White <taw@physics.org>2011-07-08 11:47:33 +0200
committerThomas White <taw@physics.org>2012-02-22 15:27:32 +0100
commitaa204284927a93af8da554ddf534cca6f3c79b44 (patch)
tree35b8aa1cfa0a73238e2c46a097618210890f3178 /src
parentb6eaa3b5b4274d88d17743465a0e361f726824a4 (diff)
Comment out debugging stuff
Diffstat (limited to 'src')
-rw-r--r--src/hrs-scaling.c63
-rw-r--r--src/utils.h1
2 files changed, 62 insertions, 2 deletions
diff --git a/src/hrs-scaling.c b/src/hrs-scaling.c
index 60a6c2f4..e6ccd770 100644
--- a/src/hrs-scaling.c
+++ b/src/hrs-scaling.c
@@ -489,7 +489,7 @@ static RefList *guess_scaled_reflections(struct image *images, int n)
}
-static void show_scale_factors(struct image *images, int n)
+static UNUSED void show_scale_factors(struct image *images, int n)
{
int i;
for ( i=0; i<n; i++ ) {
@@ -498,6 +498,63 @@ static void show_scale_factors(struct image *images, int n)
}
+static UNUSED double total_dev(struct image *image, const RefList *full)
+{
+ double dev = 0.0;
+
+ /* For each reflection */
+ Reflection *refl;
+ RefListIterator *iter;
+
+ for ( refl = first_refl(image->reflections, &iter);
+ refl != NULL;
+ refl = next_refl(refl, iter) ) {
+
+ double G, p;
+ signed int h, k, l;
+ Reflection *full_version;
+ double I_full, I_partial;
+
+ if ( !get_scalable(refl) ) continue;
+
+ get_indices(refl, &h, &k, &l);
+ assert((h!=0) || (k!=0) || (l!=0));
+
+ full_version = find_refl(full, h, k, l);
+ if ( full_version == NULL ) continue;
+ /* Some reflections may have recently become scalable, but
+ * scale_intensities() might not yet have been called, so the
+ * full version may not have been calculated yet. */
+
+ G = image->osf;
+ p = get_partiality(refl);
+ I_partial = get_intensity(refl);
+ I_full = get_intensity(full_version);
+ //STATUS("%3i %3i %3i %5.2f %5.2f %5.2f %5.2f %5.2f\n",
+ // h, k, l, G, p, I_partial, I_full,
+ // I_partial - p*G*I_full);
+
+ dev += pow(I_partial - p*G*I_full, 2.0);
+
+ }
+
+ return dev;
+}
+
+
+static UNUSED void plot_graph(struct image *image, RefList *reference)
+{
+ double sc;
+
+ for ( sc=0.0; sc<3.0; sc+=0.1 ) {
+
+ image->osf = sc;
+ STATUS("%5.2f: %e\n", sc, total_dev(image, reference));
+
+ }
+}
+
+
/* Scale the stack of images */
RefList *scale_intensities(struct image *images, int n, RefList *reference)
{
@@ -510,6 +567,8 @@ RefList *scale_intensities(struct image *images, int n, RefList *reference)
/* Start with all scale factors equal */
for ( m=0; m<n; m++ ) images[m].osf = 1.0;
+ //plot_graph(images, reference);
+
cref = find_common_reflections(images, n);
full = guess_scaled_reflections(images, n);
@@ -527,7 +586,7 @@ RefList *scale_intensities(struct image *images, int n, RefList *reference)
free(cref);
- show_scale_factors(images, n);
+ //show_scale_factors(images, n);
lsq_intensities(images, n, full);
return full;
diff --git a/src/utils.h b/src/utils.h
index 3e0b3af9..66299867 100644
--- a/src/utils.h
+++ b/src/utils.h
@@ -171,6 +171,7 @@ static inline int within_tolerance(double a, double b, double percent)
/* Joules to eV */
#define J_to_eV(a) ((a)/ELECTRON_CHARGE)
+#define UNUSED __attribute__((unused))
/* -------------------- Indexed lists for specified types ------------------- */