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authorThomas White <taw@physics.org>2011-03-30 12:00:03 +0200
committerThomas White <taw@physics.org>2012-02-22 15:27:22 +0100
commitc4443c95bec3046dde482a52f89ec2b27579386a (patch)
treec8b10d7287ccfb4529fa5d5d9edcc2e9452ba853 /tests
parent3ec5ca8ce9ee0317b2211162c55638e8bf8b0e73 (diff)
Add some simple unit tests for merging
Diffstat (limited to 'tests')
-rwxr-xr-xtests/first_merge_check43
-rw-r--r--tests/first_merge_check.hkl3
-rwxr-xr-xtests/second_merge_check43
-rwxr-xr-xtests/third_merge_check58
-rw-r--r--tests/third_merge_check.hkl3
5 files changed, 150 insertions, 0 deletions
diff --git a/tests/first_merge_check b/tests/first_merge_check
new file mode 100755
index 00000000..bfec2188
--- /dev/null
+++ b/tests/first_merge_check
@@ -0,0 +1,43 @@
+#!/bin/sh
+
+cat > first_merge_check.stream << EOF
+CrystFEL stream format 2.0
+Command line: indexamajig -i dummy.lst -o dummy.stream --kraken=prawn
+----- Begin chunk -----
+Image filename: dummy.h5
+No unit cell from indexing.
+Cell parameters 27.74398 27.84377 16.90346 nm, 88.53688 91.11774 118.75944 deg
+astar = -0.0283891 +0.0149254 -0.0257273 nm^-1
+bstar = -0.0068281 +0.0403989 -0.0005196 nm^-1
+cstar = +0.0406926 +0.0052233 -0.0426520 nm^-1
+I0 = 1.0 (arbitrary units)
+photon_energy_eV = 2000.0
+Reflections measured after indexing
+ h k l I phase sigma(I) 1/d(nm^-1) counts fs/px ss/px
+ 1 0 0 100.00 - 0.00 1.0 1 938.0 629.0
+End of reflections
+----- End chunk -----
+
+----- Begin chunk -----
+Image filename: dummy.h5
+No unit cell from indexing.
+Cell parameters 27.74398 27.84377 16.90346 nm, 88.53688 91.11774 118.75944 deg
+astar = -0.0283891 +0.0149254 -0.0257273 nm^-1
+bstar = -0.0068281 +0.0403989 -0.0005196 nm^-1
+cstar = +0.0406926 +0.0052233 -0.0426520 nm^-1
+I0 = 1.0 (arbitrary units)
+photon_energy_eV = 2000.0
+Reflections measured after indexing
+ h k l I phase sigma(I) 1/d(nm^-1) counts fs/px ss/px
+ 1 0 0 200.00 - 0.00 1.0 1 938.0 629.0
+End of reflections
+----- End chunk -----
+EOF
+
+src/process_hkl -i first_merge_check.stream -o first_merge_check.hkl
+diff first_merge_check.hkl tests/first_merge_check.hkl
+if [ $? -ne 0 ]; then
+ exit 1
+fi
+rm -f first_merge_check.stream first_merge_check.hkl
+exit 0
diff --git a/tests/first_merge_check.hkl b/tests/first_merge_check.hkl
new file mode 100644
index 00000000..a57f7c9c
--- /dev/null
+++ b/tests/first_merge_check.hkl
@@ -0,0 +1,3 @@
+ h k l I phase sigma(I) 1/d(nm^-1) counts fs/px ss/px
+ 1 0 0 150.00 - 35.36 - 2 0.0 0.0
+End of reflections
diff --git a/tests/second_merge_check b/tests/second_merge_check
new file mode 100755
index 00000000..ed002ebf
--- /dev/null
+++ b/tests/second_merge_check
@@ -0,0 +1,43 @@
+#!/bin/sh
+
+cat > second_merge_check.stream << EOF
+CrystFEL stream format 2.0
+Command line: indexamajig -i dummy.lst -o dummy.stream --kraken=prawn
+----- Begin chunk -----
+Image filename: dummy.h5
+No unit cell from indexing.
+Cell parameters 27.74398 27.84377 16.90346 nm, 88.53688 91.11774 118.75944 deg
+astar = -0.0283891 +0.0149254 -0.0257273 nm^-1
+bstar = -0.0068281 +0.0403989 -0.0005196 nm^-1
+cstar = +0.0406926 +0.0052233 -0.0426520 nm^-1
+I0 = 1.0 (arbitrary units)
+photon_energy_eV = 2000.0
+Reflections measured after indexing
+ h k l I phase sigma(I) 1/d(nm^-1) counts fs/px ss/px
+ 1 0 0 100.00 - 0.00 1.0 1 938.0 629.0
+End of reflections
+----- End chunk -----
+
+----- Begin chunk -----
+Image filename: dummy.h5
+No unit cell from indexing.
+Cell parameters 27.74398 27.84377 16.90346 nm, 88.53688 91.11774 118.75944 deg
+astar = -0.0283891 +0.0149254 -0.0257273 nm^-1
+bstar = -0.0068281 +0.0403989 -0.0005196 nm^-1
+cstar = +0.0406926 +0.0052233 -0.0426520 nm^-1
+I0 = 1.0 (arbitrary units)
+photon_energy_eV = 2000.0
+Reflections measured after indexing
+ h k l I phase sigma(I) 1/d(nm^-1) counts fs/px ss/px
+ -1 0 0 200.00 - 0.00 1.0 1 938.0 629.0
+End of reflections
+----- End chunk -----
+EOF
+
+src/process_hkl -y -1 -i second_merge_check.stream -o second_merge_check.hkl
+diff second_merge_check.hkl tests/first_merge_check.hkl
+if [ $? -ne 0 ]; then
+ exit 1
+fi
+rm -f second_merge_check.stream second_merge_check.hkl
+exit 0
diff --git a/tests/third_merge_check b/tests/third_merge_check
new file mode 100755
index 00000000..c5174c36
--- /dev/null
+++ b/tests/third_merge_check
@@ -0,0 +1,58 @@
+#!/bin/sh
+
+cat > third_merge_check.stream << EOF
+CrystFEL stream format 2.0
+Command line: indexamajig -i dummy.lst -o dummy.stream --kraken=prawn
+----- Begin chunk -----
+Image filename: dummy.h5
+No unit cell from indexing.
+Cell parameters 27.74398 27.84377 16.90346 nm, 88.53688 91.11774 118.75944 deg
+astar = -0.0283891 +0.0149254 -0.0257273 nm^-1
+bstar = -0.0068281 +0.0403989 -0.0005196 nm^-1
+cstar = +0.0406926 +0.0052233 -0.0426520 nm^-1
+I0 = 1.0 (arbitrary units)
+photon_energy_eV = 2000.0
+Reflections measured after indexing
+ h k l I phase sigma(I) 1/d(nm^-1) counts fs/px ss/px
+ 1 0 0 100.00 - 0.00 1.0 1 938.0 629.0
+End of reflections
+----- End chunk -----
+
+----- Begin chunk -----
+Image filename: dummy.h5
+No unit cell from indexing.
+Cell parameters 27.74398 27.84377 16.90346 nm, 88.53688 91.11774 118.75944 deg
+astar = -0.0283891 +0.0149254 -0.0257273 nm^-1
+bstar = -0.0068281 +0.0403989 -0.0005196 nm^-1
+cstar = +0.0406926 +0.0052233 -0.0426520 nm^-1
+I0 = 1.0 (arbitrary units)
+photon_energy_eV = 2000.0
+Reflections measured after indexing
+ h k l I phase sigma(I) 1/d(nm^-1) counts fs/px ss/px
+ 1 0 0 200.00 - 0.00 1.0 1 938.0 629.0
+End of reflections
+----- End chunk -----
+
+----- Begin chunk -----
+Image filename: dummy.h5
+No unit cell from indexing.
+Cell parameters 27.74398 27.84377 16.90346 nm, 88.53688 91.11774 118.75944 deg
+astar = -0.0283891 +0.0149254 -0.0257273 nm^-1
+bstar = -0.0068281 +0.0403989 -0.0005196 nm^-1
+cstar = +0.0406926 +0.0052233 -0.0426520 nm^-1
+I0 = 1.0 (arbitrary units)
+photon_energy_eV = 2000.0
+Reflections measured after indexing
+ h k l I phase sigma(I) 1/d(nm^-1) counts fs/px ss/px
+ 1 0 0 100.00 - 0.00 1.0 1 938.0 629.0
+End of reflections
+----- End chunk -----
+EOF
+
+src/process_hkl -i third_merge_check.stream -o third_merge_check.hkl
+diff third_merge_check.hkl tests/third_merge_check.hkl
+if [ $? -ne 0 ]; then
+ exit 1
+fi
+rm -f third_merge_check.stream third_merge_check.hkl
+exit 0
diff --git a/tests/third_merge_check.hkl b/tests/third_merge_check.hkl
new file mode 100644
index 00000000..540dc3f3
--- /dev/null
+++ b/tests/third_merge_check.hkl
@@ -0,0 +1,3 @@
+ h k l I phase sigma(I) 1/d(nm^-1) counts fs/px ss/px
+ 1 0 0 133.33 - 27.22 - 3 0.0 0.0
+End of reflections