diff options
| -rwxr-xr-x | scripts/install-indexers | 165 |
1 files changed, 119 insertions, 46 deletions
diff --git a/scripts/install-indexers b/scripts/install-indexers index 553ab14a..f7a36375 100755 --- a/scripts/install-indexers +++ b/scripts/install-indexers @@ -5,7 +5,45 @@ CFPREFIX=/usr # Set the location of syminfo.lib here -SYMINFO=/usr/share/ccp4/syminfo.lib +SYMINFO=/usr/local/share/ccp4/syminfo.lib + +SYS=`uname -sm` +if [ "$SYS" == "Linux x86_64" ]; then + MOSFLM=mosflm-linux-64-noX11 + DIRAX=dirax1.17-Linux-x86_64-static.tar.Z + DIRAX_TAR_ARGS=-xZf + XDS=XDS-INTEL64_Linux_x86_64 + PLATFORM="Linux x86_64" +fi + +if [ "$SYS" == "Linux i686" ]; then + MOSFLM=mosflm-linux-32-noX11 + DIRAX=dirax1.17-Linux-i686-static.tar.Z + DIRAX_TAR_ARGS=-xZf + XDS=x + PLATFORM="Linux x86 (32 bit)" +fi + +if [ "$SYS" == "Darwin x86_64" ]; then + MOSFLM=mosflm-linux-64-noX11 + DIRAX=dirax1.16-Darwin-x86_64.tar.gz + DIRAX_TAR_ARGS=-xzf + XDS=XDS-OSX_64.tar.gz + PLATFORM="MacOS x86_64" +fi + +if [ "$SYS" == "Darwin arm64" ]; then + MOSFLM=x + DIRAX=x + XDS=XDS-Apple_M1.tar.gz + PLATFORM="MacOS ARM (Apple silicon)" +fi + +if [ "x$PLATFORM" == x ]; then + echo Could not identify your system: $SYS + uname -a + exit 1 +fi if [ x$1 == x--help ]; then echo 'This script downloads and installs Mosflm, DirAx and XDS' @@ -14,7 +52,8 @@ if [ x$1 == x--help ]; then echo Step 2: $0 'install ' \# perhaps with sudo echo echo ' Installation location:' $CFPREFIX - echo 'CCP4 syminfo.lib location:' $SYMINFO + echo 'CCP4 syminfo.lib location:' $SYMINFO '(only needed for Mosflm)' + echo ' Platform:' $PLATFORM echo echo 'Please note the license conditions for each program:' echo ' DirAx: http://www.crystal.chem.uu.nl/distr/dirax/' @@ -23,13 +62,6 @@ if [ x$1 == x--help ]; then exit 0 fi -if [ ! -f $SYMINFO ]; then - echo Cannot find SYMINFO file at $SYMINFO - echo -n You need to install libCCP4 - echo ' (separately, or as part of the CrystFEL installation process)' - echo Or, edit the script to set the correct location - exit 1 -fi # Exit immediately if something doesn't work set -e @@ -41,53 +73,94 @@ if [ x$1 != xinstall ]; then exit 1 fi + if [ -d mosflm-tempdir -o -d xds-tempdir -o -d dirax-tempdir ]; then + echo Delete the following directories before trying again: + echo mosflm-tempdir xds-tempdir dirax-tempdir + exit 1 + fi + echo ' Installation location:' $CFPREFIX - echo 'CCP4 syminfo.lib location:' $SYMINFO + echo 'CCP4 syminfo.lib location:' $SYMINFO '(only needed for Mosflm)' + echo ' Platform:' $PLATFORM echo - mkdir mosflm-tempdir - pushd mosflm-tempdir - wget -nv https://www.mrc-lmb.cam.ac.uk/mosflm/mosflm/ver740/pre-built/mosflm-linux-64-noX11.zip - unzip mosflm-linux-64-noX11.zip - echo '#!/bin/sh' > mosflm - echo "export SYMINFO=$SYMINFO" >> mosflm - echo "$CFPREFIX/bin/mosflm.real -n \$@" >> mosflm - chmod +x mosflm - popd + if [ x$MOSFLM != xx ]; then + + if [ ! -f $SYMINFO ]; then + echo Cannot find SYMINFO file at $SYMINFO + echo -n You need to install libCCP4 + echo ' (separately, or as part of the CrystFEL installation process)' + echo Or, edit the script to set the correct location + exit 1 + fi + + mkdir mosflm-tempdir + pushd mosflm-tempdir + wget -nv https://www.mrc-lmb.cam.ac.uk/mosflm/mosflm/ver740/pre-built/$MOSFLM.zip + unzip $MOSFLM.zip + mv $MOSFLM mosflm.real + echo '#!/bin/sh' > mosflm + echo "export SYMINFO=$SYMINFO" >> mosflm + echo "$CFPREFIX/bin/mosflm.real -n \$@" >> mosflm + chmod +x mosflm + popd + else + echo "Mosflm is not available for your system." + fi - mkdir dirax-tempdir - pushd dirax-tempdir - wget -nv http://www.crystal.chem.uu.nl/distr/dirax/download/dirax1.17-Linux-x86_64-static.tar.Z - set +e - tar -xZf dirax1.17-Linux-x86_64-static.tar.Z - if [ $? != 0 ]; then - echo You might need to install package \'ncompress\' - exit 1 + if [ x$DIRAX != xx ]; then + mkdir dirax-tempdir + pushd dirax-tempdir + wget -nv http://www.crystal.chem.uu.nl/distr/dirax/download/$DIRAX + set +e + tar $DIRAX_TAR_ARGS $DIRAX + if [ $? != 0 ]; then + echo You might need to install package \'ncompress\' + exit 1 + fi + set -e + mv dirax dirax.real + echo "#!/bin/sh" > dirax + echo "exec $CFPREFIX/bin/dirax.real \"\$@\"" >> dirax + chmod +x dirax + popd + else + echo Dirax is not available for your system. fi - set -e - mv dirax dirax.real - echo "#!/bin/sh" > dirax - echo "exec $CFPREFIX/bin/dirax.real \"\$@\"" >> dirax - chmod +x dirax - popd - mkdir xds-tempdir - pushd xds-tempdir - wget -nv https://xds.mr.mpg.de/XDS-INTEL64_Linux_x86_64.tar.gz - tar -xzf XDS-INTEL64_Linux_x86_64.tar.gz - popd + if [ x$XDS != xx ]; then + mkdir xds-tempdir + pushd xds-tempdir + wget -nv https://xds.mr.mpg.de/$XDS.tar.gz + tar -xzf $XDS.tar.gz + mv $XDS/xds xds + popd + else + echo XDS is not available for your system. + fi else - if [ ! -f mosflm-tempdir/mosflm-linux-64-noX11 ]; then - echo Run this script without \'install\' first - exit 1 + if [ ! -f mosflm-tempdir/mosflm.real ]; then + if [ ! -f xds-tempdir/xds ]; then + echo Run this script without \'install\' first + exit 1 + fi fi set -x - install -D mosflm-tempdir/mosflm-linux-64-noX11 $CFPREFIX/bin/mosflm.real - install mosflm-tempdir/mosflm $CFPREFIX/bin/mosflm - install dirax-tempdir/dirax dirax-tempdir/dirax.real $CFPREFIX/bin - install --mode=644 dirax-tempdir/dirax.commands $CFPREFIX/bin - install xds-tempdir/XDS-INTEL64_Linux_x86_64/xds $CFPREFIX/bin/xds + + if [ -f mosflm-tempdir/mosflm ]; then + install -D mosflm-tempdir/mosflm.real $CFPREFIX/bin/mosflm.real + install mosflm-tempdir/mosflm $CFPREFIX/bin/mosflm + fi + + if [ -f dirax-tempdir/dirax ]; then + install dirax-tempdir/dirax dirax-tempdir/dirax.real $CFPREFIX/bin + install --mode=644 dirax-tempdir/dirax.commands $CFPREFIX/bin + fi + + if [ -f xds-tempdir/xds ]; then + install xds-tempdir/xds $CFPREFIX/bin/xds + fi fi |