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-rw-r--r--doc/man/indexamajig.14
-rw-r--r--src/indexamajig.c5
2 files changed, 4 insertions, 5 deletions
diff --git a/doc/man/indexamajig.1 b/doc/man/indexamajig.1
index 7ab68ba5..87657ac5 100644
--- a/doc/man/indexamajig.1
+++ b/doc/man/indexamajig.1
@@ -302,9 +302,9 @@ with old scripts because this option selects the behaviour which is now the
default.
.PD 0
-.IP \fB--use-saturated\fR
+.IP \fB--no-use-saturated\fR
.PD
-Normally, peaks which contain one or more pixels above max_adu (defined in the detector geometry file) will not be used for indexing. Using this option skips this check, possibly improving the indexing rate if there is a large proportion of saturated peaks.
+Normally, peaks which contain one or more pixels above max_adu (defined in the detector geometry file) will be used for indexing (but not used in the final integration - see the section on peak integration above). Using this option causes saturated peaks to be ignored completely. The opposite is \fB--use-saturated\fR, which is the default.
.PD 0
.IP \fB--no-revalidate\fR
diff --git a/src/indexamajig.c b/src/indexamajig.c
index dc244866..67e9a7c4 100644
--- a/src/indexamajig.c
+++ b/src/indexamajig.c
@@ -139,9 +139,7 @@ static void show_help(const char *s)
" --no-check-prefix Don't attempt to correct the --prefix.\n"
" --closer-peak Don't integrate from the location of a nearby peak\n"
" instead of the predicted spot. Don't use.\n"
-" --use-saturated During the initial peak search, don't reject\n"
-" peaks which contain pixels above max_adu.\n"
-" --integrate-saturated During the final integration stage, don't reject\n"
+" --no-use-saturated During the initial peak search, reject\n"
" peaks which contain pixels above max_adu.\n"
" --no-revalidate Don't re-integrate and check HDF5 peaks for\n"
" validity.\n"
@@ -239,6 +237,7 @@ int main(int argc, char *argv[])
{"no-refls-in-stream", 0, &iargs.stream_refls, 0},
{"integrate-saturated",0, &iargs.integrate_saturated,1},
{"use-saturated", 0, &iargs.use_saturated, 1},
+ {"no-use-saturated", 0, &iargs.use_saturated, 0},
{"no-revalidate", 0, &iargs.no_revalidate, 1},
/* Long-only options with arguments */