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-rw-r--r--doc/reference/CrystFEL-docs.sgml13
-rw-r--r--doc/reference/CrystFEL-sections.txt50
2 files changed, 63 insertions, 0 deletions
diff --git a/doc/reference/CrystFEL-docs.sgml b/doc/reference/CrystFEL-docs.sgml
index 88e03fd5..74fa1580 100644
--- a/doc/reference/CrystFEL-docs.sgml
+++ b/doc/reference/CrystFEL-docs.sgml
@@ -62,7 +62,20 @@
<xi:include href="xml/detector.xml"><xi:fallback /></xi:include>
</chapter>
+ <chapter>
+ <title>HDF5</title>
+ <xi:include href="xml/hdf5-file.xml"><xi:fallback /></xi:include>
+ </chapter>
+ <chapter>
+ <title>Stream</title>
+ <xi:include href="xml/stream.xml"><xi:fallback /></xi:include>
+ </chapter>
+
+ <chapter>
+ <title>Render</title>
+ <xi:include href="xml/render.xml"><xi:fallback /></xi:include>
+ </chapter>
<chapter>
<title>Parallel programming</title>
diff --git a/doc/reference/CrystFEL-sections.txt b/doc/reference/CrystFEL-sections.txt
index ca01c6f9..65b5eac0 100644
--- a/doc/reference/CrystFEL-sections.txt
+++ b/doc/reference/CrystFEL-sections.txt
@@ -201,6 +201,9 @@ build_indexer_list
cleanup_indexing
prepare_indexing
index_pattern
+run_dirax
+run_mosflm
+indexingprivate
</SECTION>
<SECTION>
@@ -211,6 +214,12 @@ has_bisecting_mirror_or_diad
has_perpendicular_mirror
is_polyhedral
rotational_order
+num_equivs
+num_general_equivs
+get_asymm
+get_equiv
+get_general_equiv
+get_twins
</SECTION>
<SECTION>
@@ -222,4 +231,45 @@ get_detector_geometry
find_panel
find_panel_by_name
find_panel_number
+simple_geometry
+record_image
+get_pixel_extents
+get_q
+get_q_for_panel
+get_tt
+</SECTION>
+
+<SECTION>
+<FILE>hdf5-file</FILE>
+hdf5_read
+hdf5_write
+hdfile
+hdfile_close
+hdfile_get_image_binned
+hdfile_get_string_value
+hdfile_open
+hdfile_read_group
+hdfile_set_first_image
+hdfile_set_image
+</SECTION>
+
+<SECTION>
+<FILE>stream</FILE>
+parse_stream_flags
+read_chunk
+write_chunk
+write_stream_header
+skip_some_files
+is_stream
+get_value
+count_patterns
+</SECTION>
+
+<SECTION>
+<FILE>render</FILE>
+render_get_colour_scale
+render_panels
+render_scale
+render_tiff_fp
+render_tiff_int16
</SECTION>