diff options
Diffstat (limited to 'doc/reference/libcrystfel')
| -rw-r--r-- | doc/reference/libcrystfel/CrystFEL-docs.sgml | 5 | ||||
| -rw-r--r-- | doc/reference/libcrystfel/CrystFEL-sections.txt | 36 |
2 files changed, 40 insertions, 1 deletions
diff --git a/doc/reference/libcrystfel/CrystFEL-docs.sgml b/doc/reference/libcrystfel/CrystFEL-docs.sgml index 1aef3ddb..e9027306 100644 --- a/doc/reference/libcrystfel/CrystFEL-docs.sgml +++ b/doc/reference/libcrystfel/CrystFEL-docs.sgml @@ -43,6 +43,11 @@ </chapter> <chapter> + <title>Events</title> + <xi:include href="xml/events.xml"/> + </chapter> + + <chapter> <title>Geometry of diffraction</title> <xi:include href="xml/geometry.xml"/> </chapter> diff --git a/doc/reference/libcrystfel/CrystFEL-sections.txt b/doc/reference/libcrystfel/CrystFEL-sections.txt index f3b5dc59..7b06c2cd 100644 --- a/doc/reference/libcrystfel/CrystFEL-sections.txt +++ b/doc/reference/libcrystfel/CrystFEL-sections.txt @@ -94,6 +94,7 @@ cell_get_reciprocal cell_get_centering cell_get_lattice_type cell_get_unique_axis +cell_has_parameters <SUBSECTION> cell_set_cartesian cell_set_parameters @@ -132,6 +133,7 @@ right_handed str_lattice forbidden_reflection load_cell_from_pdb +load_cell_from_file lattice_from_str </SECTION> @@ -202,10 +204,15 @@ histogram_set_num_bins <SECTION> <FILE>image</FILE> image +beam_params +imagefeature ImageFeatureList SpectrumType +sample +<SUBSECTION> image_add_feature image_feature_closest +image_reflection_closest image_feature_count image_feature_list_free image_feature_list_new @@ -327,11 +334,18 @@ intmat_print <SECTION> <FILE>detector</FILE> +detector +panel +badregion +rigid_group +rg_collection +<SUBSECTION> copy_geom fill_in_values free_detector_geometry get_detector_geometry write_detector_geometry +write_detector_geometry_2 find_panel find_panel_by_name find_panel_number @@ -342,15 +356,22 @@ get_q get_q_for_panel get_tt smallest_q -twod_mapping reverse_2d_mapping largest_q in_bad_region mark_resolution_range_as_bad +find_orig_panel +panel_is_in_rigid_group +rigid_group_is_in_collection +single_panel_data_source +find_rigid_group_collection_by_name </SECTION> <SECTION> <FILE>events</FILE> +event +event_list +<SUBSECTION> initialize_event push_path_entry_to_event pop_path_entry_from_event @@ -358,6 +379,7 @@ push_dim_entry_to_event pop_dim_entry_from_event copy_event free_event +find_event get_event_string get_event_from_event_string event_path_placeholder_subst @@ -374,6 +396,7 @@ initialize_dim_structure default_dim_structure set_dim_structure_entry free_dim_structure_entry +free_dim_structure </SECTION> <SECTION> @@ -383,6 +406,7 @@ free_dim_structure_entry <SECTION> <FILE>hdf5-file</FILE> hdf5_read +hdf5_read2 hdf5_write hdf5_write_image hdfile @@ -394,13 +418,17 @@ hdfile_read_group hdfile_set_first_image hdfile_set_image get_value +get_ev_based_value copy_hdf5_field copy_hdf5_fields add_copy_hdf5_field new_copy_hdf5_field_list free_copy_hdf5_field_list get_peaks +get_peaks_cxi hdfile_is_scalar +check_path_existence +fill_event_list </SECTION> <SECTION> @@ -419,6 +447,7 @@ crystal_get_profile_radius crystal_get_reflections crystal_get_resolution_limit crystal_get_user_flag +crystal_get_num_implausible_reflections crystal_set_cell crystal_set_image crystal_set_mosaicity @@ -428,16 +457,20 @@ crystal_set_profile_radius crystal_set_reflections crystal_set_resolution_limit crystal_set_user_flag +crystal_set_num_implausible_reflections </SECTION> <SECTION> <FILE>geometry</FILE> PartialityModel find_intersections +find_intersections_to_res select_intersections update_partialities update_partialities_2 polarisation_correction +sphere_fraction +gaussian_fraction </SECTION> <SECTION> @@ -501,4 +534,5 @@ rewind_stream is_stream write_command write_geometry_file +extract_f_from_stuff </SECTION> |