diff options
Diffstat (limited to 'libcrystfel/src/peaks.h')
| -rw-r--r-- | libcrystfel/src/peaks.h | 32 |
1 files changed, 24 insertions, 8 deletions
diff --git a/libcrystfel/src/peaks.h b/libcrystfel/src/peaks.h index 6e61758c..2f100db2 100644 --- a/libcrystfel/src/peaks.h +++ b/libcrystfel/src/peaks.h @@ -3,11 +3,11 @@ * * Peak search and other image analysis * - * Copyright © 2012-2020 Deutsches Elektronen-Synchrotron DESY, + * Copyright © 2012-2021 Deutsches Elektronen-Synchrotron DESY, * a research centre of the Helmholtz Association. * * Authors: - * 2010-2018 Thomas White <taw@physics.org> + * 2010-2020 Thomas White <taw@physics.org> * 2017 Valerio Mariani <valerio.mariani@desy.de> * 2017-2018 Yaroslav Gevorkov <yaroslav.gevorkov@desy.de> * @@ -31,14 +31,12 @@ #ifndef PEAKS_H #define PEAKS_H -#ifdef HAVE_CONFIG_H -#include <config.h> -#endif - #include <pthread.h> #include "reflist.h" #include "crystal.h" +#include "image.h" +#include "detgeom.h" #ifdef __cplusplus extern "C" { @@ -49,7 +47,23 @@ extern "C" { * Peak search functions */ -extern int *make_BgMask(struct image *image, struct panel *p, double ir_inn); +enum peak_search_method { + PEAK_PEAKFINDER9, + PEAK_PEAKFINDER8, + PEAK_ZAEF, + PEAK_HDF5, + PEAK_CXI, + PEAK_MSGPACK, + PEAK_NONE, + PEAK_ERROR +}; + +extern const char *str_peaksearch(enum peak_search_method meth); + +extern enum peak_search_method parse_peaksearch(const char *arg); + +extern int *make_BgMask(struct image *image, struct detgeom_panel *p, + int pn, double ir_inn); extern void search_peaks(struct image *image, float threshold, float min_gradient, float min_snr, double ir_inn, @@ -78,7 +92,9 @@ extern void validate_peaks(struct image *image, double min_snr, int ir_inn, int ir_mid, int ir_out, int use_saturated, int check_snr); -extern double estimate_peak_resolution(ImageFeatureList *peaks, double lambda); +extern double estimate_peak_resolution(ImageFeatureList *peaks, + double lambda, + struct detgeom *det); #ifdef __cplusplus } |