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-rw-r--r--libcrystfel/Makefile.am2
-rw-r--r--libcrystfel/src/hdf5-file.c18
-rw-r--r--libcrystfel/src/peaks.c8
3 files changed, 2 insertions, 26 deletions
diff --git a/libcrystfel/Makefile.am b/libcrystfel/Makefile.am
index a86b7786..d13bbc93 100644
--- a/libcrystfel/Makefile.am
+++ b/libcrystfel/Makefile.am
@@ -25,5 +25,5 @@ libcrystfel_la_include_HEADERS = src/beam-parameters.h src/hdf5-file.h \
src/index-priv.h src/reax.h
INCLUDES = "-I$(top_srcdir)/data"
-AM_CPPFLAGS = -DDATADIR=\""$(datadir)"\" -I$(top_builddir)/lib
+AM_CPPFLAGS = -DDATADIR=\""$(datadir)"\" -I$(top_builddir)/lib -Wall
AM_CPPFLAGS += -I$(top_srcdir)/lib @LIBCRYSTFEL_CFLAGS@
diff --git a/libcrystfel/src/hdf5-file.c b/libcrystfel/src/hdf5-file.c
index c212abcb..0310465c 100644
--- a/libcrystfel/src/hdf5-file.c
+++ b/libcrystfel/src/hdf5-file.c
@@ -317,24 +317,6 @@ static double get_wavelength(struct hdfile *f)
}
-static double get_i0(struct hdfile *f)
-{
- herr_t r;
- hid_t dh;
- double i0;
-
- dh = H5Dopen2(f->fh, "/LCLS/f_11_ENRC", H5P_DEFAULT);
- if ( dh < 0 ) return -1.0;
-
- r = H5Dread(dh, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL,
- H5P_DEFAULT, &i0);
- H5Dclose(dh);
- if ( r < 0 ) return -1.0;
-
- return i0;
-}
-
-
static void debodge_saturation(struct hdfile *f, struct image *image)
{
hid_t dh, sh;
diff --git a/libcrystfel/src/peaks.c b/libcrystfel/src/peaks.c
index 974d5b2e..cfe27496 100644
--- a/libcrystfel/src/peaks.c
+++ b/libcrystfel/src/peaks.c
@@ -186,8 +186,6 @@ int integrate_peak(struct image *image, int cfs, int css,
for ( ss=-ir_out; ss<+ir_out; ss++ ) {
double val;
- double tt = 0.0;
- double phi, pa, pb, pol;
uint16_t flags;
struct panel *p2;
int idx;
@@ -237,8 +235,6 @@ int integrate_peak(struct image *image, int cfs, int css,
for ( ss=-ir_inn; ss<+ir_inn; ss++ ) {
double val;
- double tt = 0.0;
- double phi, pa, pb, pol;
uint16_t flags;
struct panel *p2;
int idx;
@@ -309,8 +305,6 @@ static void search_peaks_in_panel(struct image *image, float threshold,
double f_ss = 0.0;
double intensity = 0.0;
double sigma = 0.0;
- double pbg = 0.0;
- double pmax = 0.0;
int nrej_dis = 0;
int nrej_pro = 0;
int nrej_fra = 0;
@@ -564,6 +558,7 @@ static int compare_resolution(const void *av, const void *bv)
return a->res > b->res;
}
+
static struct integr_ind *sort_reflections(RefList *list, UnitCell *cell,
int *np)
{
@@ -629,7 +624,6 @@ void integrate_reflections(struct image *image, int use_closer, int bgsub,
double fs, ss, intensity;
double d;
int idx;
- double bg, max;
double sigma, snr;
double pfs, pss;
int r;