diff options
Diffstat (limited to 'libcrystfel')
-rw-r--r-- | libcrystfel/Makefile.am | 2 | ||||
-rw-r--r-- | libcrystfel/src/index-priv.h | 45 | ||||
-rw-r--r-- | libcrystfel/src/index.c | 1 | ||||
-rw-r--r-- | libcrystfel/src/index.h | 12 | ||||
-rw-r--r-- | libcrystfel/src/peaks.h | 3 | ||||
-rw-r--r-- | libcrystfel/src/reax.c | 1 | ||||
-rw-r--r-- | libcrystfel/src/symmetry.h | 2 |
7 files changed, 14 insertions, 52 deletions
diff --git a/libcrystfel/Makefile.am b/libcrystfel/Makefile.am index 5f5ff7fa..ae717e55 100644 --- a/libcrystfel/Makefile.am +++ b/libcrystfel/Makefile.am @@ -24,7 +24,7 @@ libcrystfel_la_include_HEADERS = src/beam-parameters.h src/hdf5-file.h \ src/geometry.h src/peaks.h src/stream.h \ src/render.h src/index.h src/image.h \ src/filters.h src/dirax.h src/mosflm.h \ - src/index-priv.h src/reax.h src/cell-utils.h \ + src/reax.h src/cell-utils.h \ src/integer_matrix.h src/crystal.h \ src/grainspotter.h src/xds.h diff --git a/libcrystfel/src/index-priv.h b/libcrystfel/src/index-priv.h deleted file mode 100644 index 6fccee9f..00000000 --- a/libcrystfel/src/index-priv.h +++ /dev/null @@ -1,45 +0,0 @@ -/* - * index-priv.h - * - * Indexing private data - * - * Copyright © 2012 Deutsches Elektronen-Synchrotron DESY, - * a research centre of the Helmholtz Association. - * - * Authors: - * 2010,2012 Thomas White <taw@physics.org> - * - * This file is part of CrystFEL. - * - * CrystFEL is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * CrystFEL is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with CrystFEL. If not, see <http://www.gnu.org/licenses/>. - * - */ - -#ifndef INDEXPRIV_H -#define INDEXPRIV_H - -#ifdef HAVE_CONFIG_H -#include <config.h> -#endif - - -#include "index.h" - -struct _indexingprivate -{ - IndexingMethod indm; -}; - - -#endif /* INDEXPRIV_H */ diff --git a/libcrystfel/src/index.c b/libcrystfel/src/index.c index 311dc2ce..bd187cf5 100644 --- a/libcrystfel/src/index.c +++ b/libcrystfel/src/index.c @@ -48,7 +48,6 @@ #include "xds.h" #include "detector.h" #include "index.h" -#include "index-priv.h" #include "reax.h" #include "grainspotter.h" #include "geometry.h" diff --git a/libcrystfel/src/index.h b/libcrystfel/src/index.h index f8f6e55b..31ee4339 100644 --- a/libcrystfel/src/index.h +++ b/libcrystfel/src/index.h @@ -64,6 +64,18 @@ * @INDEXING_DIRAX: Invoke DirAx * @INDEXING_MOSFLM: Invoke MOSFLM * @INDEXING_REAX: DPS algorithm using known cell parameters + * @INDEXING_GRAINSPOTTER: Invoke GrainSpotter + * @INDEXING_XDS: Invokve XDS + * @INDEXING_CHECK_CELL_COMBINATIONS: Check linear combinations of unit cell + * axes for agreement with given cell. + * @INDEXING_CHECK_CELL_AXES: Check unit cell axes for agreement with given + * cell, and permute them if necessary. + * @INDEXING_CHECK_PEAKS: Check that the peaks can be explained by the indexing + * result. + * @INDEXING_USE_LATTICE_TYPE: Use lattice type and centering information to + * guide the indexing process. + * @INDEXING_USE_CELL_PARAMETERS: Use the unit cell parameters to guide the + * indexingprocess. * * An enumeration of all the available indexing methods. **/ diff --git a/libcrystfel/src/peaks.h b/libcrystfel/src/peaks.h index 6be728fe..f788bae5 100644 --- a/libcrystfel/src/peaks.h +++ b/libcrystfel/src/peaks.h @@ -50,9 +50,6 @@ extern void integrate_reflections(struct image *image, extern int peak_sanity_check(struct image *image, Crystal **crystals, int n_cryst); -extern void estimate_resolution(RefList *list, UnitCell *cell, - double *min, double *max); - extern void validate_peaks(struct image *image, double min_snr, int ir_inn, int ir_mid, int ir_out, int use_saturated); diff --git a/libcrystfel/src/reax.c b/libcrystfel/src/reax.c index 3460a4f2..4ecb870b 100644 --- a/libcrystfel/src/reax.c +++ b/libcrystfel/src/reax.c @@ -48,7 +48,6 @@ #include "cell.h" #include "cell-utils.h" #include "index.h" -#include "index-priv.h" /* Minimum number of standard deviations above the mean a peak must be in the diff --git a/libcrystfel/src/symmetry.h b/libcrystfel/src/symmetry.h index 4a8f98d3..7c80522a 100644 --- a/libcrystfel/src/symmetry.h +++ b/libcrystfel/src/symmetry.h @@ -79,6 +79,6 @@ extern int is_centrosymmetric(const SymOpList *s); extern const char *symmetry_name(const SymOpList *ops); extern void describe_symmetry(const SymOpList *s); -extern void add_symop(SymOpList *s, IntegerMatrix *m); +extern void add_symop(SymOpList *ops, IntegerMatrix *m); #endif /* SYMMETRY_H */ |