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-rw-r--r--src/hdfsee.c17
1 files changed, 11 insertions, 6 deletions
diff --git a/src/hdfsee.c b/src/hdfsee.c
index a1d16b56..ff74ead6 100644
--- a/src/hdfsee.c
+++ b/src/hdfsee.c
@@ -38,9 +38,11 @@ static void show_help(const char *s)
" -p, --peak-overlay=<filename> Draw circles in positions listed in file.\n"
" -i, --int-boost=<n> Multiply intensity by <n>.\n"
" -b, --binning=<n> Set display binning to <n>.\n"
-" --clean-image Perform common-mode noise subtraction and\n"
-" background removal on images before\n"
-" proceeding.\n"
+" --filter-cm Perform common-mode noise subtraction.\n"
+" --filter-noise Apply an aggressive noise filter which\n"
+" sets all pixels in each 3x3 region to\n"
+" zero if any of them have negative\n"
+" values.\n"
"\n");
}
@@ -79,7 +81,8 @@ int main(int argc, char *argv[])
char *peaks = NULL;
int boost = 1;
int binning = 2;
- int config_clean = 0;
+ int config_cmfilter = 0;
+ int config_noisefilter = 0;
/* Long options */
const struct option longopts[] = {
@@ -87,7 +90,8 @@ int main(int argc, char *argv[])
{"peak-overlay", 1, NULL, 'p'},
{"int-boost", 1, NULL, 'i'},
{"binning", 1, NULL, 'b'},
- {"clean-image", 0, &config_clean, 1},
+ {"filter-cm", 0, &config_cmfilter, 1},
+ {"filter-noise", 0, &config_noisefilter, 1},
{0, 0, NULL, 0}
};
@@ -145,7 +149,8 @@ int main(int argc, char *argv[])
for ( i=0; i<nfiles; i++ ) {
main_window_list[i] = displaywindow_open(argv[optind+i], peaks,
boost, binning,
- config_clean);
+ config_cmfilter,
+ config_noisefilter);
if ( main_window_list[i] == NULL ) {
ERROR("Couldn't open display window\n");
} else {