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-rw-r--r--src/index.c16
1 files changed, 9 insertions, 7 deletions
diff --git a/src/index.c b/src/index.c
index 01e7aa4b..5a2704f4 100644
--- a/src/index.c
+++ b/src/index.c
@@ -109,6 +109,8 @@ static void write_drx(struct image *image)
}
+/* write .spt file for mosflm */
+/* need to sort mosflm peaks by intensity... */
struct sptline {
double x; /* x coordinate of peak */
double y; /* y coordinate of peak */
@@ -116,7 +118,7 @@ struct sptline {
double s; /* sigma of peak */
};
-/* need to sort mosflm peaks by intensity... */
+
static int compare_vals(const void *ap, const void *bp)
{
const struct sptline a = *(struct sptline *)ap;
@@ -127,7 +129,7 @@ static int compare_vals(const void *ap, const void *bp)
return 0;
}
-/* write .spt file for mosflm */
+
static void write_spt(struct image *image)
{
FILE *fh;
@@ -201,9 +203,9 @@ void write_img(struct image *image)
unsigned short int * intimage;
intimage = malloc(sizeof(unsigned short int));
- intimage[0] = 0;
+ intimage[0] = 1;
- snprintf(filename, 1023, "xfel-%i.img", image->id);
+ snprintf(filename, 1023, "xfel-%i_001.img", image->id);
fh = fopen(filename, "w");
if ( !fh ) {
@@ -219,7 +221,7 @@ void write_img(struct image *image)
fprintf(fh,"SIZE2=1;\n");
fprintf(fh,"}\n");
while ( ftell(fh) < 512 ) { fprintf(fh," "); };
- fwrite(fh,sizeof(unsigned short int),1,fh);
+ fwrite(intimage,sizeof(unsigned short int),1,fh);
fclose(fh);
}
@@ -262,8 +264,8 @@ void index_pattern(struct image *image, UnitCell *cell, IndexingMethod indm,
break;
case INDEXING_MOSFLM :
write_spt(image);
- write_img(image); /* don't do this every time? */
- run_mosflm(image);
+ write_img(image); /* dummy image. not needed for each frame.*/
+ run_mosflm(image,cell);
break;
case INDEXING_TEMPLATE :
match_templates(image, ipriv);