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-rw-r--r--src/indexamajig.c11
1 files changed, 9 insertions, 2 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c
index b7ec6345..eef9a381 100644
--- a/src/indexamajig.c
+++ b/src/indexamajig.c
@@ -65,6 +65,7 @@ struct static_index_args
int config_satcorr;
int config_closer;
int config_insane;
+ int config_bgsub;
float threshold;
float min_gradient;
struct detector *det;
@@ -179,6 +180,8 @@ static void show_help(const char *s)
" --unpolarized Don't correct for the polarisation of the X-rays.\n"
" --no-sat-corr Don't correct values of saturated peaks using a\n"
" table included in the HDF5 file.\n"
+" --bg-sub Subtract local background estimates from\n"
+" integrated intensities.\n"
" --threshold=<n> Only accept peaks above <n> ADU. Default: 800.\n"
" --min-gradient=<n> Minimum gradient for Zaefferer peak search.\n"
" Default: 100,000.\n"
@@ -333,7 +336,8 @@ static void process_image(void *pp, int cookie)
0, 0.1);
integrate_reflections(&image, config_polar,
- pargs->static_args.config_closer);
+ pargs->static_args.config_closer,
+ pargs->static_args.config_bgsub);
/* OR */
@@ -505,6 +509,7 @@ int main(int argc, char *argv[])
int config_checkprefix = 1;
int config_closer = 1;
int config_insane = 0;
+ int config_bgsub = 0;
int config_basename = 0;
float threshold = 800.0;
float min_gradient = 100000.0;
@@ -565,7 +570,8 @@ int main(int argc, char *argv[])
{"record", 1, NULL, 5},
{"cpus", 1, NULL, 6},
{"cpugroup", 1, NULL, 7},
- {"cpuoffset", 1, NULL, 8},
+ {"cpuoffset", 1, NULL, 8},
+ {"bg-sub", 1, &config_bgsub, 0},
{0, 0, NULL, 0}
};
@@ -872,6 +878,7 @@ int main(int argc, char *argv[])
qargs.static_args.config_satcorr = config_satcorr;
qargs.static_args.config_closer = config_closer;
qargs.static_args.config_insane = config_insane;
+ qargs.static_args.config_bgsub = config_bgsub;
qargs.static_args.cellr = cellr;
qargs.static_args.threshold = threshold;
qargs.static_args.min_gradient = min_gradient;