diff options
Diffstat (limited to 'src/indexamajig.c')
| -rw-r--r-- | src/indexamajig.c | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index f628eb29..2e5c8904 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -161,6 +161,8 @@ static void show_help(const char *s) " least 10%% of the located peaks.\n" " --no-bg-sub Don't subtract local background estimates from\n" " integrated intensities.\n" +" --integrate-saturated During the final integration stage, don't reject\n" +" peaks which contain pixels above max_adu.\n" ); } @@ -242,6 +244,7 @@ int main(int argc, char *argv[]) float ir_inn = 4.0; float ir_mid = 5.0; float ir_out = 7.0; + int integrate_saturated = 0; copyme = new_copy_hdf5_field_list(); if ( copyme == NULL ) { @@ -288,6 +291,7 @@ int main(int argc, char *argv[]) {"min-integration-snr",1, NULL, 12}, {"tolerance", 1, NULL, 13}, {"int-radius", 1, NULL, 14}, + {"integrate-saturated",0, &integrate_saturated,1}, {0, 0, NULL, 0} }; @@ -634,6 +638,7 @@ int main(int argc, char *argv[]) iargs.ir_inn = ir_inn; iargs.ir_mid = ir_mid; iargs.ir_out = ir_out; + iargs.integrate_saturated = integrate_saturated; create_sandbox(&iargs, n_proc, prefix, config_basename, fh, use_this_one_instead, ofh); |