diff options
Diffstat (limited to 'src/indexamajig.c')
| -rw-r--r-- | src/indexamajig.c | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index ae03986c..b132331c 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -167,6 +167,9 @@ static void show_help(const char *s) " peaks which contain pixels above max_adu.\n" " --no-revalidate Don't re-integrate and check HDF5 peaks for\n" " validity.\n" +" --integrate-found Skip the spot prediction step, and just integrate\n" +" the intensities of the spots found by the initial\n" +" peak search.\n" ); } @@ -251,6 +254,7 @@ int main(int argc, char *argv[]) int integrate_saturated = 0; int use_saturated = 0; int no_revalidate = 0; + int integrate_found = 0; copyme = new_copy_hdf5_field_list(); if ( copyme == NULL ) { @@ -300,6 +304,7 @@ int main(int argc, char *argv[]) {"integrate-saturated",0, &integrate_saturated,1}, {"use-saturated",0, &use_saturated, 1}, {"no-revalidate", 0, &no_revalidate, 1}, + {"integrate-found", 0, &integrate_found, 1}, {0, 0, NULL, 0} }; @@ -649,6 +654,7 @@ int main(int argc, char *argv[]) iargs.use_saturated = use_saturated; iargs.integrate_saturated = integrate_saturated; iargs.no_revalidate = no_revalidate; + iargs.integrate_found = integrate_found; create_sandbox(&iargs, n_proc, prefix, config_basename, fh, use_this_one_instead, ofh); |