diff options
Diffstat (limited to 'src/sum_stack.c')
| -rw-r--r-- | src/sum_stack.c | 17 |
1 files changed, 14 insertions, 3 deletions
diff --git a/src/sum_stack.c b/src/sum_stack.c index 2e5b138e..a6e7599a 100644 --- a/src/sum_stack.c +++ b/src/sum_stack.c @@ -49,6 +49,7 @@ struct sum_args SumMethod sum_method; double threshold; double min_gradient; + double min_snr; char *element; }; @@ -64,6 +65,7 @@ struct queue_args SumMethod sum_method; double threshold; double min_gradient; + double min_snr; char *element; char *use_this_one_instead; @@ -100,6 +102,8 @@ static void show_help(const char *s) " method. Default: 400 adu\n" " --min-gradient=<n> Minimum gradient for Zaefferer peak search.\n" " Default: 100,000.\n" +" --min-snr=<n> Minimum signal-to-noise ration for peaks.\n" +" Default: 5.\n" " -e, --image=<element> Use this image from the HDF5 file.\n" " Example: /data/data0.\n" " Default: The first one found.\n" @@ -116,14 +120,14 @@ static void show_help(const char *s) static void sum_peaks(struct image *image, double *sum, double threshold, - double min_gradient) + double min_gradient, double min_snr) { int i; int w = image->width; int h = image->height; const int lim = INTEGRATION_RADIUS * INTEGRATION_RADIUS; - search_peaks(image, threshold, min_gradient); + search_peaks(image, threshold, min_gradient, min_snr); for ( i=0; i<image_feature_count(image->features); i++ ) { @@ -231,7 +235,7 @@ static void add_image(void *args, int cookie) case SUM_PEAKS : sum_peaks(&image, pargs->sum, pargs->threshold, - pargs->min_gradient); + pargs->min_gradient, pargs->min_snr); break; } @@ -261,6 +265,7 @@ static void *get_image(void *qp) pargs->sum_method = qargs->sum_method; pargs->threshold = qargs->threshold; pargs->min_gradient = qargs->min_gradient; + pargs->min_snr = qargs->min_snr; pargs->config_cmfilter = qargs->config_cmfilter; pargs->config_noisefilter = qargs->config_noisefilter; pargs->sum = qargs->sum; @@ -312,6 +317,7 @@ int main(int argc, char *argv[]) char *intermediate = NULL; double threshold = 400.0; float min_gradient = 100000.0; + float min_snr = 5; SumMethod sum; int nthreads = 1; struct queue_args qargs; @@ -337,6 +343,7 @@ int main(int argc, char *argv[]) {"intermediate", 1, NULL, 'p'}, {"threshold", 1, NULL, 't'}, {"min-gradient", 1, NULL, 4}, + {"min-snr", 1, NULL, 11}, {"basename", 0, &config_basename, 1}, {"image", 1, NULL, 'e'}, {0, 0, NULL, 0} @@ -387,6 +394,10 @@ int main(int argc, char *argv[]) min_gradient = strtof(optarg, NULL); break; + case 11 : + min_snr = strtof(optarg, NULL); + break; + case 0 : break; |