CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2015-08-02	Tidy up partialator tests	Thomas White

2015-08-01	Update partialator unit tests	Thomas White

2015-08-01	partialator: Rationalise rejection diagnostics	Thomas White

2015-08-01	partialator: Add --no-free (for testing only)	Thomas White

2015-07-25	geoptimiser: Fix --help	Thomas White

2015-07-23	indexamajig: Peak detection method must be parsed before checking peak path	Thomas White

2015-07-23	Do PR with strong reflections only	Thomas White

2015-07-23	Add weightings to PR	Thomas White

2015-07-23	Make convergence criterion more stringent	Thomas White

2015-07-23	Split scaling and post-refinement apart (again)	Thomas White
	Scaling needs the log residual, PR needs the linear one
2015-07-23	Fix PR gradients (again - reverts 22dee8348b165d33262112ed1bbaf7f574b96c7e)	Thomas White
	The gradients are correct, the test way wrong.
2015-07-23	geoptimiser: Better warning messages, auto determination of spot separation	Valerio Mariani

2015-07-23	Refuse to refine the unity model	Thomas White

2015-07-23	Reject large changes of parameters	Thomas White

2015-07-21	Add random partiality model	Thomas White

2015-07-21	indexamajig: Tidy up option handling	Thomas White

2015-07-21	Add scripts/turbo-index	Thomas White

2015-07-21	partialator: Tidy up handling of bad crystals	Thomas White

2015-07-21	Update API docs	Thomas White

2015-07-20	Use old MOSFLM indexing command when using -nocell	Thomas White

2015-07-18	Merge branch 'master' of ssh://git.bitwiz.org.uk/crystfel	Thomas White

2015-07-17	partialator: Detect (in a terminal fashion) NAN partialities	Thomas White

2015-07-17	partialator: Add --no-pr	Thomas White

2015-07-17	Fix format string for num_peaks	Thomas White

2015-07-17	Load bandwidth from stream with correct units	Thomas White
	D'oh!
2015-07-17	Check that XDS indexing options are compatible with data provided by the user	Valerio Mariani

2015-07-17	Move post refinement multiprocessing stuff to post-refinement.c	Thomas White

2015-07-16	Check that sep is not null before checking its length	Valerio Mariani

2015-07-16	Fix saving of geometry refinement error maps	Valerio mariani

2015-07-16	Throw an error if the path data ends with a slash	Valerio mariani

2015-07-16	partialator: Don't merge reflections where isnan(corr)	Thomas White

2015-07-15	Add -lpthread to libcrystfel	Thomas White
	This was missing before, which caused problems when trying to link to libcrystfel when otherwise not using pthreads.
2015-07-15	Decrease maximum \|B\| to 100 A^2	Thomas White
	This partially reverts 0bcfe3cdf917ae53764c423c7af865352af47920.
2015-07-15	Add warnings for asdf when compiled without FFTW	Thomas White

2015-07-14	Fix HDF5 memory leaks	Thomas White

2015-07-13	configure: Add --with-fftw	Thomas White

2015-07-13	Fix racy queue filling	Thomas White

2015-07-13	Slow down the status updates	Thomas White

2015-07-13	Clean up semaphore on interrupt	Thomas White
	Necessary since we encourage users to interrupt indexamajig with Ctrl+C Also, generally improve the signal handling.
2015-07-13	Use named semaphores instead of unnamed	Thomas White

2015-07-13	indexamajig: Avoid forking while multithreaded	Thomas White
	Conflicts: src/im-sandbox.c
2015-07-13	Re-work im-sandbox	Thomas White
	... it certainly needed it.
2015-07-13	Fix some warnings	Thomas White

2015-07-10	Temporary fix of infinite loop bug in asdf_reduce_cell()	Alexandra Tolstikova

2015-07-09	Tidy up error handling when given dodgy data locations	Thomas White

2015-07-09	Remove -Werror from OpenCL compilation flags	Thomas White

2015-07-09	indexamajig: Fix noise filter backup/restore	Thomas White

2015-07-09	hdfsee: Use "dp" for numbers view	Thomas White

2015-07-09	Make noise filters use "dp" instead of "data"	Thomas White

2015-07-08	Fix PR gradients	Thomas White
	D'oh! This must have crept in during a big tidyup before a commit