| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-03-14 | Add SA_RESTART to signal handlers | Thomas White | |
| Fixes corrupted output when heavily multi-processing. | |||
| 2016-03-01 | scripts/check-peak-detection: Initialise $event | Thomas White | |
| 2016-03-01 | mark_resolution_range_as_bad(): Skip if nothing to do | Thomas White | |
| This speeds up indexamajig quite a bit | |||
| 2016-03-01 | indexamajig: Wall clock profiling | Thomas White | |
| 2016-02-29 | More output when reading reflections failed | Thomas White | |
| 2016-02-29 | Don't predict 000 | Thomas White | |
| 2016-02-29 | asdf: Check array bounds before using | Thomas White | |
| 2016-02-29 | Formatting | Thomas White | |
| 2016-02-23 | hdfsee: Fix panel/feature names in numbers window | Thomas White | |
| 2016-02-23 | Fixed bug with memspace size in write_location | Valerio Mariani | |
| 2016-02-12 | Update manual | Thomas White | |
| 2016-02-09 | pattern_sim: Initialise stuff for powder HDF5 | Thomas White | |
| 2016-02-09 | Fix a NULL dereference | Thomas White | |
| 2016-02-08 | Formatting | Thomas White | |
| 2016-02-05 | Update docs | Thomas White | |
| 2016-02-05 | felix: fix seg fault | Ken Beyerlein | |
| 2016-02-05 | partialator: add --output-every-cycle option to write .hkl* and .params ↵ | Keitaro Yamashita | |
| files in every cycle | |||
| 2016-02-03 | Set initial prediction parameters even when not doing prediction refinement | Thomas White | |
| Silly bug fix. Beamtime programming FTL. | |||
| 2016-01-30 | Revert "Allow peak check to pass just by accounting for more than 5 peaks" | Thomas White | |
| This reverts commit 693aae4d2219632d15174fe4c4f9d0526d6166c4. Reverting because this allows a very large number (~100% "indexing rate") of false solutions to get through simply by slackening the peak detection parameters. Since we know that "-multi" indexing doesn't work well at the moment, let's fix this properly later. | |||
| 2016-01-30 | indexamajig: Restore --no-refine | Thomas White | |
| Adds yet another indexing option... | |||
| 2016-01-29 | Perform prediction refinement straight after indexing | Thomas White | |
| This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working. | |||
| 2016-01-29 | felix: return the number of crystals | Thomas White | |
| 2016-01-29 | Use a fresh copy of the peak list for each new indexing method | Thomas White | |
| 2016-01-27 | asdf: Don't assume that the number of peaks == image_feature_count() | Thomas White | |
| Yes, really. Sorry about the crappy API. | |||
| 2016-01-16 | scripts/ave-resolution: Show histogram of resolution values | Thomas White | |
| 2016-01-15 | Use only the first two dimensions when using an external bad pixel mask or ↵ | Thomas White | |
| saturation map | |||
| 2016-01-15 | Set indexing -nomulti as the default, and add a warning | Thomas White | |
| 2016-01-13 | Fix logic for -retry and -multi | Thomas White | |
| 2016-01-08 | Make indexing "retry" and "multi" optional | Thomas White | |
| 2016-01-08 | ambigator: Don't require -y | Thomas White | |
| The manual says that -y 1 is the default. | |||
| 2016-01-08 | Replace incorrect label in geoptimiser | Valerio Mariani | |
| 2016-01-06 | Rearrange columns in partialator.params | Thomas White | |
| 2016-01-06 | Print filename and event string in the partialator.params output file | Valerio Mariani | |
| 2016-01-06 | search_peaks_in_panel(): Fix iteration bounds (again) | Thomas White | |
| 2015-12-18 | Saturation map fixes | Thomas White | |
| 2015-12-18 | Allow peak check to pass just by accounting for more than 5 peaks | Thomas White | |
| The "old" criterion is still allowed for a pass, but would filter out multi-lattice hits. | |||
| 2015-12-18 | "Retry" mechanism for indexing | Thomas White | |
| This increases the indexing rate a bit in situations where there are lots of weak peaks which, although they may be real, don't help indexing. The weakest 10% of peaks get cut out and the indexing re-run. This also allows multiple hits to be indexed, using the "inelegant peak subtraction method", by retrying indexing in the same way after deleting peaks which are accounted for by the lattice just found. | |||
| 2015-12-17 | hdfsee: Update docs | Thomas White | |
| 2015-12-17 | list_events: Handle broken event list | Thomas White | |
| 2015-12-17 | Clean up unused code | Thomas White | |
| 2015-12-15 | Update paper reference in geoptimiser man page | Thomas White | |
| 2015-12-13 | indexamajig: Restart fgets() in pump_chunk() if interrupted by system call | Thomas White | |
| This fixes the occasional unterminated chunk found in the output. | |||
| 2015-12-10 | Fix integration tests for new saturation map | Thomas White | |
| 2015-12-05 | Add option for per-pixel saturation values | Thomas White | |
| 2015-12-03 | scripts/turbo-index: Add missing "done" | Thomas White | |
| 2015-12-01 | hdfsee: Round panel transformations before passing them to Cairo | Thomas White | |
| This prevents the slight blurring of image data which happened before. | |||
| 2015-11-27 | Fix documentation | Thomas White | |
| 2015-11-27 | indexamajig: Write target unit cell into stream | Thomas White | |
| 2015-11-19 | Maximum number of iterations for scaling | Thomas White | |
| 2015-11-19 | partialator: Set default push-res to infinity | Thomas White | |
| Not needed now that the scaling is more stable | |||
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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