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2016-10-10Fix bad regionsThomas White
Previously, this was broken when not using a mask
2016-10-10Add missing newlineThomas White
2016-10-10Fussiness / boilerplateThomas White
2016-10-10Fixed bug with positioning of secondary ASICsValerio Mariani
2016-10-10Geoptimiser now uses detector shift informationValerio Mariani
2016-10-10New default min peak distance for geoptimiserValerio Mariani
2016-10-10Added detector shift to crystal structure, wrote get and get functionsValerio Mariani
2016-10-10cell_explorer: Add "Save cell" functionThomas White
2016-10-07XDS: Clean up open filesThomas White
2016-10-06hdf5_write_image(): Write the correct dataThomas White
2016-10-06pattern_sim: Zero image array before each frameThomas White
2016-10-06hdf5_write_image(): Use correct dataspace for writingThomas White
2016-10-06pattern_sim: Free stuff at endThomas White
2016-10-06pattern_sim: Fix loop bounds in record_image()Thomas White
2016-09-12Add newline at end of geometry file in stream, if not already presentThomas White
2016-09-12Restore loading of saturation mapThomas White
2016-09-12Restore loading of bad pixel mapThomas White
2016-09-07XDS: Create fake coordinates taking detector z into accountThomas White
2016-09-07Mosflm: Create fake coordinates taking detector z into accountThomas White
2016-08-17Fix tests/ring_checkThomas White
2016-08-17Update tests to handle audit lines at end of reflection listsThomas White
2016-08-16indexamajig: Detect and kill hung worker processesThomas White
2016-08-16Remove unused memberThomas White
2016-08-16scripts/move-entire-detector: Use argparse instead of optparseThomas White
The main motivation for this was that argparse handles positional arguments which start with minus signs, which is the behaviour we prefer here.
2016-08-16scripts/create-mtz: Update to handle unknown number of lines after end markerThomas White
2016-08-16get_hkl: Preserve input file's notes in output fileThomas White
2016-08-16get_hkl, partialator, process_hkl: Add command line and version infoThomas White
2016-08-16Add reflist_add_command_and_version()Thomas White
2016-08-16Read and write RefList notes to reflection list filesThomas White
2016-08-16Add notes to RefListThomas White
2016-08-11Take rail direction as a vector rather than individual x,y,z valuesThomas White
Just to make it more consistent with fs/ss directions
2016-08-11Use whole of 'value' field when parsing top-level geometry optionsThomas White
This is a long-standing bug, which we got away with up to now because top-level options with more than just a single number or location were rare or possibly never used at all.
2016-08-10Ensure z component is set in dir_conv()Thomas White
2016-08-10Set default clen_for_centeringThomas White
If the rail vector is +z (the default), then the value doesn't matter. However, it still mustn't be NaN.
2016-08-10Allow peak table location to be given in geometry fileThomas White
2016-08-09Update manualThomas White
2016-08-09Remove debugging outputThomas White
2016-08-09Add rail direction to geometryThomas White
2016-08-03Add scripts/move-entire-detector and scripts/split-by-maskThomas White
2016-07-29Use z component in GPU simulationThomas White
2016-07-29Use z components in predictionThomas White
2016-07-29Add z direction to panel directions and update get_q_for_panel()Thomas White
2016-07-29tests/gpu_sim_check: Restore actual check (!)Thomas White
2016-07-29Panel coordinate fixes for GPU simulationThomas White
2016-07-29Set image->dp in hdf5_read()Thomas White
2016-07-29hdfsee: Fix crash because of panel nameThomas White
2016-07-29hdfsee: Fix coordinatesThomas White
2016-07-28Check return values when writing to Mosflm or DirAxThomas White
2016-07-15partial_sim: Fix rounding for sketchesThomas White
2016-07-15geoptimiser: Fix correction of average displacementsThomas White