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AgeCommit message (Collapse)Author
2016-03-24Fussiness/formattingThomas White
2016-03-24Simplify event enumeration a bitThomas White
2016-03-24event_path_placeholder_subst(): Simplify a bitThomas White
2016-03-24Don't use %C conversionThomas White
2016-03-22scripts/fg-graph: Remove "monochrome"Thomas White
Not sure what this is doing here, or why it wasn't noticed before...
2016-03-22scripts/detector-shift: Show a 'heat map' histogram of detector offsetThomas White
2016-03-22scripts/detector-shift: Handle panel resolutions correctlyThomas White
2016-03-22Workaround for CLOCK_MONOTONIC_RAW on old Linux (<2.6.28)Thomas White
2016-03-21This is CrystFEL 0.6.20.6.2Thomas White
2016-03-21Make scripts/gaincal-to-saturation-map executableThomas White
2016-03-18cell_explorer: Switch font back to Serif (from Liberation Serif)Thomas White
This makes the Greek letters come up at SLAC.... again. Reverts 779d87eb08fa2b185c43a82814aecc0e1a00eef9.
2016-03-18Update docsThomas White
2016-03-18Update docsThomas White
2016-03-18Add scripts/gaincal-to-saturation-mapThomas White
2016-03-18Tiny clean-upsThomas White
2016-03-15write_detector_geometry_2(): Clean upThomas White
Fixes CRYS-138: hdfsee wipes geometry if new file is saved over old one
2016-03-14Add SA_RESTART to signal handlersThomas White
Fixes corrupted output when heavily multi-processing.
2016-03-01scripts/check-peak-detection: Initialise $eventThomas White
2016-03-01mark_resolution_range_as_bad(): Skip if nothing to doThomas White
This speeds up indexamajig quite a bit
2016-03-01indexamajig: Wall clock profilingThomas White
2016-02-29More output when reading reflections failedThomas White
2016-02-29Don't predict 000Thomas White
2016-02-29asdf: Check array bounds before usingThomas White
2016-02-29FormattingThomas White
2016-02-23hdfsee: Fix panel/feature names in numbers windowThomas White
2016-02-23Fixed bug with memspace size in write_locationValerio Mariani
2016-02-12Update manualThomas White
2016-02-09pattern_sim: Initialise stuff for powder HDF5Thomas White
2016-02-09Fix a NULL dereferenceThomas White
2016-02-08FormattingThomas White
2016-02-05Update docsThomas White
2016-02-05felix: fix seg faultKen Beyerlein
2016-02-05partialator: add --output-every-cycle option to write .hkl* and .params ↵Keitaro Yamashita
files in every cycle
2016-02-03Set initial prediction parameters even when not doing prediction refinementThomas White
Silly bug fix. Beamtime programming FTL.
2016-01-30Revert "Allow peak check to pass just by accounting for more than 5 peaks"Thomas White
This reverts commit 693aae4d2219632d15174fe4c4f9d0526d6166c4. Reverting because this allows a very large number (~100% "indexing rate") of false solutions to get through simply by slackening the peak detection parameters. Since we know that "-multi" indexing doesn't work well at the moment, let's fix this properly later.
2016-01-30indexamajig: Restore --no-refineThomas White
Adds yet another indexing option...
2016-01-29Perform prediction refinement straight after indexingThomas White
This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working.
2016-01-29felix: return the number of crystalsThomas White
2016-01-29Use a fresh copy of the peak list for each new indexing methodThomas White
2016-01-27asdf: Don't assume that the number of peaks == image_feature_count()Thomas White
Yes, really. Sorry about the crappy API.
2016-01-16scripts/ave-resolution: Show histogram of resolution valuesThomas White
2016-01-15Use only the first two dimensions when using an external bad pixel mask or ↵Thomas White
saturation map
2016-01-15Set indexing -nomulti as the default, and add a warningThomas White
2016-01-13Fix logic for -retry and -multiThomas White
2016-01-08Make indexing "retry" and "multi" optionalThomas White
2016-01-08ambigator: Don't require -yThomas White
The manual says that -y 1 is the default.
2016-01-08Replace incorrect label in geoptimiserValerio Mariani
2016-01-06Rearrange columns in partialator.paramsThomas White
2016-01-06Print filename and event string in the partialator.params output fileValerio Mariani
2016-01-06search_peaks_in_panel(): Fix iteration bounds (again)Thomas White
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