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2013-02-18indexamajig: Remove --verbose optionThomas White
This hasn't done anything at all since the new indexing subsystem, and hasn't done anything useful for a lot longer.
2013-02-18Add 'xfelmode' to GrainSpotter argsThomas White
2013-02-18Read GrainSpotter's output properlyThomas White
2013-02-18Merge branch 'tom/grainspotter' into tom/multicrystalThomas White
Conflicts: libcrystfel/Makefile.am libcrystfel/src/index.c libcrystfel/src/index.h
2013-02-18Whoops: what was labelled as "gradient" was actually "squared gradient"Thomas White
2013-02-15Add a small warning to the docsThomas White
2013-02-15"mosflm-nolatt" should not be sending "SYMM P1"Thomas White
2013-02-15Check for lattice type should be done before calling match_cell()Thomas White
2013-02-15Use "CRYSTAL R" to avoid having to uncenter the unit cell from MOSFLMThomas White
2013-02-15FussinessThomas White
2013-02-15Update docsThomas White
2013-02-15Update merge tests for new stream formatThomas White
2013-02-12Don't lose the last chunks from each workerThomas White
2013-02-12Improve handling of indexing methodsThomas White
2013-02-11Improve and fix stream marshallingThomas White
2013-02-11Add commentThomas White
2013-02-10Read lattice type and centering information back from MOSFLMThomas White
2013-02-10FormattingThomas White
2013-02-09Add cleanup functions for DirAx and MOSFLMThomas White
2013-02-09Complain if a unit cell is needed and not providedThomas White
2013-02-09Fussiness, formatting and SPOTThomas White
2013-02-09scripts/alternate-stream: Fix for new stream formatThomas White
2013-02-09Fix optionsThomas White
2013-02-09Rework indexamajig option processingThomas White
2013-02-09Add '--res-cutoff'Thomas White
2013-02-09Use H3 instead of H32 when asking for 'hexagonal H'Thomas White
2013-02-09MOSFLM returns 'hexagonal H' if we ask for 'rhombohedral R'. Growl.Thomas White
2013-02-09uncenter_cell: Free transformation if it's not needed by the callerThomas White
2013-02-09Restore control over what goes in the streamThomas White
2013-02-09Clarify lattice type informationThomas White
2013-02-09hdfsee: Tidy up confusing error messageThomas White
2013-02-08Saturation counting fixesThomas White
2013-02-08scripts/peak-intensity: Count saturationThomas White
2013-02-08Allow --indexing=noneThomas White
2013-02-08Count saturated peaks and record in the fileThomas White
2013-02-08Small tweaksThomas White
2013-02-08Put the command line back in the streamThomas White
2013-02-08Update docs, comments etcThomas White
2013-02-06Some small(ish) fixesThomas White
2013-02-06Fix process_hklThomas White
2013-02-06StuffThomas White
2013-02-06Stuff for partial_simThomas White
2013-02-06Stuff for partialatorThomas White
2013-02-05WIP on updating partialatorThomas White
2013-02-05FormattingThomas White
2013-02-05Fixes for indexing pipelineThomas White
2013-02-05Indexing pipeline - "done"!Thomas White
2013-02-05WIP on bringing programs up to dateThomas White
2013-02-04Indexing stuffThomas White
2013-02-01WIP on new indexing pipeline logicThomas White