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2020-06-22This is CrystFEL 0.9.10.9.1Thomas White
2020-05-12Add missing newline in error messageThomas White
2020-05-12Fix silly mistake in cell reductionThomas White
2020-05-12scripts/*2hkl: Add reflection list headerThomas White
2020-04-03Break down hdfile_get_string_value()Thomas White
There are just too many cases here. Variable/fixed length, array of either of those, with/without event structure. And that's just for real strings (not numbers that will be converted to strings). For now, I think the only unhandled case is an array of variable length strings. We can fix this when/if one turns up in the wild.
2020-04-01Request HDF5 1.10 APIThomas White
There are changes with 1.12 which we can't use yet (need to maintain compatibility down to 1.8 for now, but the subset of the HDF5 API we use works with 1.8 and 1.10).
2020-03-31hdfile_get_string_value: Handle arrays of fixed length stringsThomas White
2020-03-31Catch NULL event in make_dataspacesThomas White
2020-03-31Improve error message in hdfile_get_string_value()Thomas White
2020-03-16hdfile_get_string_value: Handle arrays of variable length stringsThomas White
2020-03-13uncenter_cell(): Convert R to PThomas White
Otherwise, the cell comparison doesn't recognise the cells as the same, breaking indexing with an R reference cell. Unfortunately, the resulting cell after comparison by compare_r_c_p still comes out as P, but that doesn't seem like a big loss. To get it strictly correct, we'd need some way of tracking through the information that the cell got "uncentered" from R to P, even though the matrix is an identity.
2020-03-09integrate_rings_once: Handle case where reflection is negative by < 1 photonThomas White
2020-03-05transfer-geom: Only write coffset for panels which have themThomas White
2020-03-05plot-pr-contourmap: Don't use "print"Thomas White
Makes it compatible with Python 3
2020-03-05partialator: Gracefully handle negative and NaN sigma valuesThomas White
Of course, these should never happen.
2020-03-04fix documentation for pinkIndexerYaroslav Gevorkov
2020-03-04add option -pinkIndexer-max-refinement-disbalanceYaroslav Gevorkov
2020-02-28hdfile_get_value(): Check that ev->dim_length > 0 before looking in dim_entriesThomas White
2020-02-13Update crystfel(7) manual pageThomas White
2020-02-11indexamajig: Fix incorrect units of default cell toleranceThomas White
2020-02-11Fix comment typoThomas White
2020-02-11Remove vestigial HAVE_CPU_AFFINITYThomas White
2020-02-11Update READMEThomas White
2020-02-11Don't use gzbuffer if it's not availableThomas White
Enables compatability with zlib < 1.2.3.5
2020-02-11Merge branch 'yaroslav/pinkIndexer_fixes'Thomas White
2020-02-08pinIndexer documentation tuningYaroslav Gevorkov
2020-02-07refine documentation for --pinkIndexer-override-bandwidthYaroslav Gevorkov
2020-02-07add error message for too small reflection radius when using electronsYaroslav Gevorkov
2020-02-07fix error message for photon_energy not known at indexer_prepareYaroslav Gevorkov
2020-02-07fix pinkIndexer documentationYaroslav Gevorkov
2020-02-05This is CrystFEL 0.9.00.9.0Thomas White
2020-02-05Manual page updatesThomas White
2020-02-05Fix manual typoThomas White
2020-02-05indexamajig: Hide --spectrum-file and add a warningThomas White
2020-02-04Handle CRLF line terminators in geometry filesThomas White
This was broken by d62367db8fee57, which was some enabling work for reading geometry info from streams.
2020-02-04extract-geom: Remove extra newlinesThomas White
2020-01-10Remove scripts/cell-pleaseThomas White
Replaced by cell_explorer many years ago
2020-01-10Mass update of copyright datesThomas White
2019-12-13pair_peaks: Don't attempt to pair 000Thomas White
Normally the beam centre is masked out or not on the detector. However, when it is, pairing with 000 causes gradients to come out as NaN and the prediction refinement to fail.
2019-11-18Fix documentationThomas White
2019-11-18PinkIndexer documentationYaroslav Gevorkov
2019-11-15get_hkl: Fix resolution cutoffThomas White
The units needed to be clarified.
2019-11-15Add partiality model GGPMWolfgang Brehm
2019-11-13fix long variable names in argp_optionYaroslav Gevorkov
2019-11-13rename "overriden" to "custom"Yaroslav Gevorkov
2019-11-13catch input errorYaroslav Gevorkov
2019-11-13add option --pinkIndexer-override-visible-energy-rangeYaroslav Gevorkov
2019-11-13Fix peak check logic for multiple crystalsThomas White
It seems that the code wasn't properly updated when multi-crystal indexing was introducted. This "continue" statement didn't do anything.
2019-11-13extract-geom: Fix newlineThomas White
2019-11-05bug fix for standard bandwidth in pinkIndexerYaroslav Gevorkov
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