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2020-03-31Improve error message in hdfile_get_string_value()Thomas White
2020-03-16hdfile_get_string_value: Handle arrays of variable length stringsThomas White
2020-03-13uncenter_cell(): Convert R to PThomas White
Otherwise, the cell comparison doesn't recognise the cells as the same, breaking indexing with an R reference cell. Unfortunately, the resulting cell after comparison by compare_r_c_p still comes out as P, but that doesn't seem like a big loss. To get it strictly correct, we'd need some way of tracking through the information that the cell got "uncentered" from R to P, even though the matrix is an identity.
2020-03-09integrate_rings_once: Handle case where reflection is negative by < 1 photonThomas White
2020-03-05transfer-geom: Only write coffset for panels which have themThomas White
2020-03-05plot-pr-contourmap: Don't use "print"Thomas White
Makes it compatible with Python 3
2020-03-05partialator: Gracefully handle negative and NaN sigma valuesThomas White
Of course, these should never happen.
2020-03-04fix documentation for pinkIndexerYaroslav Gevorkov
2020-03-04add option -pinkIndexer-max-refinement-disbalanceYaroslav Gevorkov
2020-02-28hdfile_get_value(): Check that ev->dim_length > 0 before looking in dim_entriesThomas White
2020-02-13Update crystfel(7) manual pageThomas White
2020-02-11indexamajig: Fix incorrect units of default cell toleranceThomas White
2020-02-11Fix comment typoThomas White
2020-02-11Remove vestigial HAVE_CPU_AFFINITYThomas White
2020-02-11Update READMEThomas White
2020-02-11Don't use gzbuffer if it's not availableThomas White
Enables compatability with zlib < 1.2.3.5
2020-02-11Merge branch 'yaroslav/pinkIndexer_fixes'Thomas White
2020-02-08pinIndexer documentation tuningYaroslav Gevorkov
2020-02-07refine documentation for --pinkIndexer-override-bandwidthYaroslav Gevorkov
2020-02-07add error message for too small reflection radius when using electronsYaroslav Gevorkov
2020-02-07fix error message for photon_energy not known at indexer_prepareYaroslav Gevorkov
2020-02-07fix pinkIndexer documentationYaroslav Gevorkov
2020-02-05This is CrystFEL 0.9.00.9.0Thomas White
2020-02-05Manual page updatesThomas White
2020-02-05Fix manual typoThomas White
2020-02-05indexamajig: Hide --spectrum-file and add a warningThomas White
2020-02-04Handle CRLF line terminators in geometry filesThomas White
This was broken by d62367db8fee57, which was some enabling work for reading geometry info from streams.
2020-02-04extract-geom: Remove extra newlinesThomas White
2020-01-10Remove scripts/cell-pleaseThomas White
Replaced by cell_explorer many years ago
2020-01-10Mass update of copyright datesThomas White
2019-12-13pair_peaks: Don't attempt to pair 000Thomas White
Normally the beam centre is masked out or not on the detector. However, when it is, pairing with 000 causes gradients to come out as NaN and the prediction refinement to fail.
2019-11-18Fix documentationThomas White
2019-11-18PinkIndexer documentationYaroslav Gevorkov
2019-11-15get_hkl: Fix resolution cutoffThomas White
The units needed to be clarified.
2019-11-15Add partiality model GGPMWolfgang Brehm
2019-11-13fix long variable names in argp_optionYaroslav Gevorkov
2019-11-13rename "overriden" to "custom"Yaroslav Gevorkov
2019-11-13catch input errorYaroslav Gevorkov
2019-11-13add option --pinkIndexer-override-visible-energy-rangeYaroslav Gevorkov
2019-11-13Fix peak check logic for multiple crystalsThomas White
It seems that the code wasn't properly updated when multi-crystal indexing was introducted. This "continue" statement didn't do anything.
2019-11-13extract-geom: Fix newlineThomas White
2019-11-05bug fix for standard bandwidth in pinkIndexerYaroslav Gevorkov
2019-11-05bug fix in Ewald sphere width calculationYaroslav Gevorkov
2019-10-29add "override" beam options to pinkIndexerYaroslav Gevorkov
2019-10-29bug fix: rename peakFinder9 argumentYaroslav Gevorkov
2019-10-24get_hkl: Clean up resolution cutoffs and add --lowresThomas White
2019-10-24polarisation_correction: Use symmetric indicesThomas White
2019-10-24polarisation_correction: Scale the sigma as wellThomas White
2019-10-22xds: Fix handedness of unit cellThomas White
Previously, it was wired to give left handed cells.
2019-10-22Add more warningsThomas White
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