| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-09-02 | RefList: assert that a Reflection can only be on one list | Thomas White | |
| 2022-08-26 | GUI: Refuse to open "Index all frames" without a geometry filename | Thomas White | |
| Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/73 | |||
| 2022-08-25 | INSTALL.md: Add a note about M1 Macs | Thomas White | |
| 2022-08-25 | CMake: remove unnecessary SVG installation | Thomas White | |
| These are included in the GResources now | |||
| 2022-08-25 | GUI: Get icons via a GResource | Thomas White | |
| Otherwise we have to mess around with custom paths whenever CrystFEL is installed in a non-system location. | |||
| 2022-08-24 | GUI: Add options for detector-shift and peakogram-stream | Thomas White | |
| Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/63 | |||
| 2022-08-24 | scripts/peakogram-stream: Better handling of multiple streams | Thomas White | |
| This allows the "-i" option to be given multiple times, instead of having to concatenate the streams via stdin. | |||
| 2022-08-24 | detector-shift: Better handling of multiple input streams | Thomas White | |
| Previously, the only way to process more than one stream was to concatenate them via stdin. Now, you can give '--' followed by a list of streams. The '--' is needed to distinguish from the situation where a geometry file is to be updated. | |||
| 2022-08-24 | Install detector-shift and peakogram-stream under 'bin' | Thomas White | |
| 2022-08-24 | GUI: Add custom task icons | Thomas White | |
| Previously, the task buttons used stock icons chosen to approximately fit the task when displayed with the icon theme on my computers. But they don't fit so well in other themes, and sometimes no icon is shown at all. So, now they have their own icons, specifically designed for CrystFEL. Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/9 | |||
| 2022-08-23 | GUI: Add resolution rings | Thomas White | |
| It will refuse to draw the rings if the detector is too far from being flat (as judged by detgeom_mean_camera_length). Otherwise, the drawing is exactly the same as was done by hdfsee. | |||
| 2022-08-22 | image_create_dp_bad_sat: Initialise saturation array to infinity | Thomas White | |
| 2022-08-22 | Update ChangeLog | Thomas White | |
| 2022-08-18 | Restructure image data array creation | Thomas White | |
| This adds a central procedure (image_create_dp_bad_sat) to create all the arrays. Then it's up to the loading procedure to put the values into the arrays. This also makes the loading procedures responsible for marking NaN/inf pixels in the bad pixel map. This avoids an additional sweep through the image data, and makes it possible to skip the NaN/inf check altogether if the image data comes, as it often does, in format which can't represent NaN/inf anyway. Finally, it removes quite a lot of duplicated code. | |||
| 2022-07-12 | Zero-weight negative intensity peaks in prediction refinement | Thomas White | |
| Strongly negative peaks can occur if there are unmasked bad pixels. These cause the refinement to diverge badly. This change stabilises the refinement such that it works even in these cases. But of course, the real solution is to mask out those pixels. Negative intensity peaks are unlikely to show up "for real" in the peak search results (because we look for strong peaks!). However, if the intensity is negative, we aren't even sure that the peak exists at all and have no reason to assume it should be close to the Bragg condition. | |||
| 2022-07-07 | indexamajig: Remove separate waitpid() calls when cleaning up last processes | Thomas White | |
| 2022-07-07 | indexamajig: --asapo-wait-for-stream doesn't require an argument | Thomas White | |
| 2022-07-07 | indexamajig: Make sure data format is initialised | Thomas White | |
| 2022-07-06 | indexamajig: Reset z->request_sent after receiving ZMQ reply | Thomas White | |
| 2022-07-06 | indexamajig: Add timeout for ZMQ socket | Thomas White | |
| 2022-07-06 | indexamajig: Add profiling and last_task info for ZMQ fetch | Thomas White | |
| 2022-07-06 | GUI: Invoke programs without path | Thomas White | |
| Including the path wasn't working very well. One of the problems is that it prevents the use of a wrapper script for the programs, which is needed for certain environments. This commit just removes the path prefixes altogether. | |||
| 2022-07-06 | Merge branch 'container-test' | Thomas White | |
| 2022-07-06 | CI: Build "latest" container only on master branch | Thomas White | |
| 2022-06-23 | indexamajig: Add --asapo-wait-for-stream | Thomas White | |
| 2022-06-22 | indexamajig: Wrap ZMQ parameters into separate structure | Thomas White | |
| 2022-06-22 | indexamajig: Wrap ASAP::O parameters up inside separate structure | Thomas White | |
| 2022-06-20 | tests/file-wait: Use older type of function definition | Thomas White | |
| The definition with the "function" keyword doesn't work on plain 'sh'. | |||
| 2022-06-20 | Simplify Dockerfile | Thomas White | |
| 2022-06-20 | Add Dockerfile and CI config for building image | Thomas White | |
| 2022-06-17 | ASAP::O: Simplify by removing stream switching logic | Thomas White | |
| 2022-06-16 | ASAP::O: Exit quicker (and with explanation) if setup fails | Thomas White | |
| 2022-06-09 | pair_peaks: Use fabs instead of abs for floating point values | Thomas White | |
| 2022-06-09 | Remove some unused variables | Thomas White | |
| 2022-06-08 | Meson: Update wrap for libccp4c | Thomas White | |
| 2022-06-02 | Meson: Don't look for cJSON unless Seedee is found | Thomas White | |
| 2022-06-02 | indexamajig: Make all three input options mutually exclusive | Thomas White | |
| 2022-06-02 | Update documentation to include ASAP::O and Seedee | Thomas White | |
| 2022-06-02 | tests/stream_roundtrip: Clean up stream afterwards | Thomas White | |
| 2022-06-02 | Merge branch 'asapo-consumer' | Thomas White | |
| 2022-06-02 | Meson: Change HAVE_ASAPO conf_data from '1' to 'true' | Thomas White | |
| See 13a36408f3b867938cb029a9d11d952113d9bf64 | |||
| 2022-06-02 | ASAP::O: Add last_task for ASAPO fetch | Thomas White | |
| 2022-06-02 | Add worker ID to profiling data | Thomas White | |
| 2022-06-02 | Add profiling for bad region generation | Thomas White | |
| 2022-06-02 | Use isfinite() instead of isnan() || isinf() | Thomas White | |
| These FP calls seem to be slower than expected. Using only one doubles the speed. | |||
| 2022-06-02 | Fix horrific Seedee memory leak | Thomas White | |
| 2022-06-02 | indexamajig: Add --asapo-stream | Thomas White | |
| 2022-06-02 | ASAP::O: Add profiling | Thomas White | |
| 2022-06-02 | Seedee deserialization | Thomas White | |
| 2022-06-02 | indexamajig: Track metadata (e.g. for ASAP::O) | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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