aboutsummaryrefslogtreecommitdiff
AgeCommit message (Collapse)Author
2013-06-01scripts/check-peak-detection: FixThomas White
2013-06-01Calculate reference profile for all pixels in peak boxThomas White
This makes no difference to the actual profile fitting, which only uses the peak region. It just makes it easier to see if the reference profile is sensible or not.
2013-06-01More space in reference profile displayThomas White
2013-06-01prof2d: Use the same mask as ringsThomas White
2013-06-01Don't update integrated location from centroid after integrationThomas White
2013-06-01hdfsee: Show panel number in numbers windowThomas White
2013-06-01Complain if an HDF5 field doesn't existThomas White
2013-06-01Set mosaicity to zeroThomas White
Later on, we'll make it refined
2013-06-01Fix rounding of pixel coordinatesThomas White
2013-05-31Remove duplicate (and incorrect) box boundary checkThomas White
2013-05-31Clear screen before showing new peak box or reference profileThomas White
2013-05-31Initialise reference_den to zeroThomas White
2013-05-31Initialise box offsets to zeroThomas White
2013-05-31Write final coordinates to the right placeThomas White
2013-05-31Fix a silly mistakeThomas White
2013-05-30Include initial centering offset in streamThomas White
2013-05-30Update peak coordinates after integrationThomas White
2013-05-30Fix previous commitThomas White
2013-05-30Remove unused parameterThomas White
2013-05-30Fix uninitialised saturation flagThomas White
2013-05-30Update docsThomas White
2013-05-30Fussiness (extreme)Thomas White
2013-05-30indexamajig: Get rid of --use-saturated, because it's now the defaultThomas White
2013-05-30Update docsThomas White
2013-05-30process_hkl: Add --min-snrThomas White
2013-05-30Fix dummy ReAx prototype (again)Thomas White
2013-05-30indexamajig: Get rid of --min-integration-snrThomas White
This functionality belongs in process_hkl.
2013-05-30Validate peaks using peak search SNR, not integration SNRThomas White
2013-05-30Tidy upThomas White
2013-05-28Add "blackhole" regions to peak integrationThomas White
Blackhole regions should be completely ignored, i.e. don't even call boxi() on such a pixel. This is distinct from pixels which can be used (e.g. for initial centroiding), but which happen not to be selected for background or peak integration.
2013-05-28Add "-cen"Thomas White
2013-05-28Attempt to center the box a bit before integrationThomas White
2013-05-28Improvements to debug outputThomas White
2013-05-28Colours in peak box display (via ncurses)Thomas White
2013-05-28Honour "-sat"Thomas White
2013-05-28--use-saturated should be the defaultThomas White
2013-05-28Rename "refine" to "prof2d"Thomas White
2013-05-28Move "rings" integration to new peak box frameworkThomas White
2013-05-27Profile fitting stuffThomas White
2013-05-27hdfsee: Fix segfault on startupThomas White
2013-05-27Debugging outputThomas White
2013-05-27Code organisationThomas White
2013-05-27Do the actual profile fittingThomas White
2013-05-27Store all peak boxesThomas White
2013-05-27Assign rigid group for panels which don't have oneThomas White
2013-05-27Calculate the reference profilesThomas White
2013-05-27Background fittingThomas White
2013-05-27Integration stuffThomas White
2013-05-27Individual panel arraysThomas White
2013-05-27Initial integration stuffThomas White