| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2017-10-19 | Remove read_reflections_from_file() from API | Thomas White | |
| See c0ce8fb4 for the rationale behind this. | |||
| 2017-10-19 | Add probe for TakeTwo | Thomas White | |
| 2017-10-18 | move-entire-detector: Fix output filename | Thomas White | |
| 2017-10-18 | New version of sum-peaks | Thomas White | |
| This version gets the array dimensions automatically. However, it still assumes the data is "slabby". | |||
| 2017-10-18 | Check that dirax,felix,mosflm or xds are available at the start | Thomas White | |
| Avoids a confusing error message later. | |||
| 2017-10-18 | indexamajig: Auto-detection of available indexing methods | Thomas White | |
| 2017-10-18 | Add probe functions to indexing methods | Thomas White | |
| 2017-10-17 | Handle old indexing methods | Thomas White | |
| There are limits to how well they can be handled, but this avoids screwing users over too much. | |||
| 2017-10-17 | felix: Set nsigmas=1 | Thomas White | |
| 2017-10-12 | indexamajig: Simplify Felix options | Thomas White | |
| 2017-10-12 | Remove write_reflections_to_file() from API | Thomas White | |
| It's there because it used to be used to write the reflections into the stream. Therefore there was a need for a function to write a bare list of reflections to a file, with no headers. Since then, the stream and merged reflection file formats have diverged, so there's no use for this other than to confuse people. | |||
| 2017-10-12 | hdfsee: Add "peaks", "preds" or "rings" to export filename, as applicable | Thomas White | |
| 2017-10-12 | hdfsee: Add event ID to exported image filename | Thomas White | |
| 2017-10-09 | indexer_str(): Don't return "none-nolatt-nocell" | Thomas White | |
| 2017-10-09 | configure.ac: Fix CBFlib path variable name | Thomas White | |
| Whoops. | |||
| 2017-10-02 | indexamajig: Tidy up --help | Thomas White | |
| 2017-10-02 | indexamajig(1): Add --temp-dir | Thomas White | |
| 2017-10-02 | Formatting fussiness | Thomas White | |
| 2017-10-02 | indexamajig: Add missing documentation for --check-peaks | Thomas White | |
| 2017-09-27 | Fix check for CBF files in event enumeration | Thomas White | |
| -1 means the check failed. | |||
| 2017-09-27 | remove_flagged_crystals(): Remove multiple bad crystals | Thomas White | |
| A silly bug | |||
| 2017-09-27 | Add an assertion | Thomas White | |
| 2017-09-27 | Don't reset user flag to zero | Thomas White | |
| Some indexing methods may set it to 1 already, in which case we should take the hint. | |||
| 2017-09-26 | Remove unnecessary counting | Thomas White | |
| 2017-09-22 | Don't send detector and tolerance to indexing methods | Thomas White | |
| The detector isn't used for anything, and the tolerance is none of their business. | |||
| 2017-09-22 | Fix silly mistake in friendly_indexer_name() | Thomas White | |
| 2017-09-22 | Remove "latt" from asdf | Thomas White | |
| For consistency with other algorithms, let's standardise on an interpretation where just using the centering information in combination with the cell parameters, which is always necessary, doesn't qualify as "cell-latt", only "cell-nolatt". "Using lattice type as prior information" implies that asdf would behave differently with cell-nolatt, if it were allowed, than with cell-latt. It wouldn't. It just needs the centering to calculate the cell volume correctly. Note that TakeTwo, by contrast, would behave differently in this hypothetical case, because it uses the lattice type to exclude certain solutions by symmetry. Mosflm allows all four combinations of no/cell and no/latt, and does indeed behave differently between them. | |||
| 2017-09-22 | asdf uses prior information for its volume constraint, so add "cell" to the ↵ | Thomas White | |
| method | |||
| 2017-09-22 | cell_explorer: Also count cells excluded by the choice of indexing method | Thomas White | |
| 2017-09-22 | Set --no-check-cell if cell is given, but has no parameters | Thomas White | |
| 2017-09-22 | cell_new_from_cell(): Don't try to duplicate non-existent parameters | Thomas White | |
| 2017-09-22 | Mosflm: Recognise P3 as hexagonal P lattice | Thomas White | |
| 2017-09-22 | Don't write cell parameters to the stream if we don't have them | Thomas White | |
| 2017-09-22 | If no cell params or lattice type, set nocell/nolatt at top level | Thomas White | |
| Another thing that the indexing engines don't need to be repsonsible for. | |||
| 2017-09-22 | Stop if an indexing method can't be prepared | Thomas White | |
| 2017-09-22 | indexamajig: Avoid segfault when no unit cell given | Thomas White | |
| 2017-09-21 | hdfsee: Increase ring thickness | Thomas White | |
| 2017-09-21 | indexamajig: Friendlier display of indexing engines | Thomas White | |
| 2017-09-21 | indexamajig: Hide indexing setup messages if we are not indexing anything | Thomas White | |
| 2017-09-21 | Improve error message when using CBF files and a multi-event geometry | Thomas White | |
| 2017-09-21 | Remove old warning for XDS indexing | Thomas White | |
| 2017-09-21 | Fix crash in XDS indexing | Thomas White | |
| 2017-09-21 | Group the options in indexamajig(1) according to processing stage | Thomas White | |
| 2017-09-21 | Update man page for new indexing options | Thomas White | |
| 2017-09-19 | geoptimiser: Remove deprecated option from --help | Thomas White | |
| 2017-09-19 | get_ev_based_value(): Allow integer types | Thomas White | |
| Just an oversight in the test | |||
| 2017-09-17 | Fix logic for new indexing options | Thomas White | |
| 2017-09-17 | indexamajig: --help documentation for new indexing options | Thomas White | |
| 2017-09-16 | Fix return of unit cells from asdf and dirax | Thomas White | |
| 2017-09-15 | Merge branch 'tom/index' | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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